View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_19 (Length: 352)
Name: NF18583_high_19
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 30850352 - 30850674
Alignment:
| Q |
1 |
agtgcactgattagagtataatgtggcgaaatcatgatagaagatgatgttaacattggtgattgaa----tgaaattgatagttgtgtgatgtggggag |
96 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
30850352 |
agtgcactgattagagtataaggtggcgaaatcataatagaagatgatgttaacattggtgattgaatgaatgaaattgatggttgtgtgatgtggggag |
30850451 |
T |
|
| Q |
97 |
aaagtggaacatggtaggtttggttggatactaaagtcattggaagtttggaacctggtctgttttgtgacccacatcatagagaaattaatcaataatg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30850452 |
aaagtggaacatggtaggtttggttggatactaaagtcattggaagtttggaacctggtctgttttgtgacccacatcatagagaaattaatcaataatg |
30850551 |
T |
|
| Q |
197 |
gattacattttggccgttaattagggtaatcaatatagtgacacattagttgcccttgtttttgtggagctaatttcctattgttggagcccacttcatg |
296 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30850552 |
gatttcattttggccgttaattagggtaatcaatatagtgacacatt-gttgccgttgtttttgtggagctaatttcctattgttggaacccacttcatg |
30850650 |
T |
|
| Q |
297 |
aatggatcacatttctttatgata |
320 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
30850651 |
aatggatcacatttctttatgata |
30850674 |
T |
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