View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18583_high_2 (Length: 643)
Name: NF18583_high_2
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 481
Target Start/End: Complemental strand, 18221527 - 18221060
Alignment:
| Q |
14 |
tcatatactagttgttgaaatcttgtaggtcagtgacaaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221527 |
tcatatactagttgttgaaatcttgtaggtcagtgacaaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaac |
18221428 |
T |
|
| Q |
114 |
gatcaaagctttggaaagccagaggggaagaaaatccctacacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221427 |
gatcaaagctttggaaagccagaggggaagaaaatccctacacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagca |
18221328 |
T |
|
| Q |
214 |
tctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttatcaatgatgccgctactagtttggttcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18221327 |
tctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttatcaatgatgctgctactagtttggttcc |
18221228 |
T |
|
| Q |
314 |
caagcagggttcatgtttgtctgagatcaagttctctggtatgatgcagtggggccaacgccggcaagttcggttcttgggccgtcatgaggagcaaaag |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221227 |
caagcagggttcatgtttgtctgagatcaagttctctggtatgatgcagtggggccaacgccggcaagttcggttcttgggccgtcatgaggagcaaaag |
18221128 |
T |
|
| Q |
414 |
gttgaacctttacctgtgattcggaaggaaaaaggtgtcatttttaacgccagagtagggactattgt |
481 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18221127 |
gttgaacctttacctgtgattcagaaggaaaaaggtgtcatttttaaggccagagtagggactattgt |
18221060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 528 - 627
Target Start/End: Complemental strand, 18221013 - 18220914
Alignment:
| Q |
528 |
aaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaaaaatc |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221013 |
aaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaaaaatc |
18220914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 196 - 428
Target Start/End: Complemental strand, 43013060 - 43012828
Alignment:
| Q |
196 |
aaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttatcaatgatgc |
295 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
43013060 |
aaacactctgtagaagcatctcagctaacgaatttgctgagaaaggaaactcatggagtttttgggtctctcctcctatgagcccagttatcaatgatgc |
43012961 |
T |
|
| Q |
296 |
cgctactagtttggttcccaagcagggttcatgtttgtctgagatcaagttctctggtatgatgcagtggggccaacgccggcaagttcggttcttgggc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43012960 |
tgctactagtttggttcccaagcagggttcatgttggtctgagatcaaattcactggtatggtgcagtggggccaacgccaacaagttcggttcttgggg |
43012861 |
T |
|
| Q |
396 |
cgtcatgaggagcaaaaggttgaacctttacct |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43012860 |
cgtcatgaggagcaaaaggttgaacctttacct |
43012828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 43013182 - 43013060
Alignment:
| Q |
14 |
tcatatactagttgttgaaatcttgtaggtcagtgacaaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaac |
113 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43013182 |
tcatttactagatgttgaaatcttgtaggtcactgacaaatgggagcaggaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaaa |
43013083 |
T |
|
| Q |
114 |
gatcaaagctttggaaagccaga |
136 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
43013082 |
gatcaatgctttggaaagccaga |
43013060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 523 - 623
Target Start/End: Complemental strand, 43012745 - 43012645
Alignment:
| Q |
523 |
ctgtcaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaa |
622 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
43012745 |
ctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaa |
43012646 |
T |
|
| Q |
623 |
a |
623 |
Q |
| |
|
| |
|
|
| T |
43012645 |
a |
43012645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University