View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_26 (Length: 311)
Name: NF18583_high_26
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 24923875 - 24924154
Alignment:
| Q |
5 |
aatggtaattggtagcgagagcgggaggaagaagagggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagc |
104 |
Q |
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| T |
24923875 |
aatggtaattggtagtgagagcgggaggaagaagagggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttatattagc |
24923974 |
T |
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| Q |
105 |
gatccgtgcgtattgagaaaatgaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggatacgcctgtgcggatcagcactttcttc |
204 |
Q |
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| T |
24923975 |
gatccgtgcgtattgagaaaaagaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggattcgcctgtgcggatcagcactttcttc |
24924074 |
T |
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| Q |
205 |
ctttgcgttagtttttgtatttccccagctcaggtagactacttctccgaggagtacttttttgtcaactgatatcatta |
284 |
Q |
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| T |
24924075 |
ctttgcgttagtttttgtgtttccccagctcagctagactacttctccgaggagtacttttttgtcaactaatatcatta |
24924154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 25084784 - 25084587
Alignment:
| Q |
24 |
agcgggaggaagaagagggaa-ctcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattgaga |
122 |
Q |
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| T |
25084784 |
agcgggatgaataagagggaaactcaaatttgtgtttttctctgcgtcgttggatttcaacttattgacggtctaaattagcgatccgtgcgtattgaga |
25084685 |
T |
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| Q |
123 |
aaatgaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggatacgcctgtgcggatcagcactttcttcctttgcgttagtttttg |
221 |
Q |
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| T |
25084684 |
aaaataataatgaccgtcgatgagtatatttgaacggtccgttttcatttt-aatgcgtctgtgcggatcagcgcttcctacctttgtgctagtttttg |
25084587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 24920308 - 24920438
Alignment:
| Q |
32 |
gaagaagagggaa-ctcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgta-ttgagaaaatgaa |
129 |
Q |
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| T |
24920308 |
gaagaagagggaaactgaattttgtgttttcttctgtgtcgttggatttcaacttatcgacggtctatattagcgatccgcgtgtagttcaccaaaacaa |
24920407 |
T |
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| Q |
130 |
tagtgaacgtcgataagtttatttgaacggt |
160 |
Q |
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| T |
24920408 |
tactgaacgttgataagtatatttgaacggt |
24920438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 21585021 - 21585119
Alignment:
| Q |
50 |
ttttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattgagaaaatgaatagtgaacgtcgataagtt |
148 |
Q |
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| T |
21585021 |
ttttgtgttttgatatgggtcgttggattttacgtaatcgacggtttaaattggcgatccgtgcgtattgtgataaggaatgatggacgttgataagtt |
21585119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 24497734 - 24497812
Alignment:
| Q |
67 |
cgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattgagaaaatgaatagtgaacgtcgataa |
145 |
Q |
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| T |
24497734 |
cgtcgttggatttgaaattatcgacggtttaaacactcgatccgtgcgtattgcccaaatgaatagtgaacgtcgataa |
24497812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 31825984 - 31826122
Alignment:
| Q |
21 |
gagagcgggaggaagaagagggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattg- |
119 |
Q |
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| T |
31825984 |
gagagcgggatgaataagagggaactgaattttgtgttttgatctcagtcgttggatttgatgtaatagacggtgtaagattgcgatccgtgcgtattgc |
31826083 |
T |
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| Q |
120 |
agaaaatgaatagtgaacgtcgataagtttatttgaacg |
158 |
Q |
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| T |
31826084 |
ggaaagcgaatgatgaacgttgataagtgtatttgaacg |
31826122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 24981807 - 24981681
Alignment:
| Q |
23 |
gagcgggaggaagaagagggaa-ctcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgta-ttga |
120 |
Q |
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||||||| ||| ||||||||| || ||||||||||||| |||| |||||||||||| | ||||||||| | || |||||||||||| | ||| ||| |
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| T |
24981807 |
gagcgggttgaataagagggaaactgaattttgtgttttgatctgagtcgttggatttcatcttatcgacgatctatattagcgatccgcgtgtagttgc |
24981708 |
T |
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| Q |
121 |
gaaaatgaatagtgaacgtcgataagt |
147 |
Q |
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| T |
24981707 |
ataaaagaatactgaacgtcgataagt |
24981681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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