View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_33 (Length: 269)
Name: NF18583_high_33
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 30836623 - 30836760
Alignment:
| Q |
113 |
gtgaagacgaaacaaaggcttagaactaaatgccaacataatcttatttcattttcacaatggcattctactttt-aatcattataatagccaggttttg |
211 |
Q |
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| T |
30836623 |
gtgaagatgaaacaaaggcttagcactaaatgcctccataatcttatttcattttcacaatggtattctactttttaatcatcataatagccaggttttg |
30836722 |
T |
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| Q |
212 |
taattgatatgcatccattaaatagtgtagcatatgta |
249 |
Q |
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| T |
30836723 |
tagttgatatgcatccattaaatagtgtagcatatgta |
30836760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 30817554 - 30817691
Alignment:
| Q |
113 |
gtgaagacgaaacaaaggcttagaactaaatgccaacataatcttatttcattttcacaatggcattctactttt-aatcattataatagccaggttttg |
211 |
Q |
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||||||| |||| |||||||||| |||||||||| ||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30817554 |
gtgaagatgaaataaaggcttagcactaaatgcctccatgatcttatttcatgtttgcaatggcattctactttttaatcattataatagccaggttttg |
30817653 |
T |
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| Q |
212 |
taattgatatgcatccattaaatagtgtagcatatgta |
249 |
Q |
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| T |
30817654 |
cagttgatatgcatccattaaatagtgtagcatatgta |
30817691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 23550270 - 23550161
Alignment:
| Q |
9 |
agcacagatcaagtaatgaaatgctatgggtaattgctaaagttctatcctcaccatattcctnnnnnnngaaagttaataattccttgattagaaataa |
108 |
Q |
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| T |
23550270 |
agcatagagcaagtaatgaaaagctatggataattgctaaagttctatcctcaccatattcctaaaaaaagaaagttaataattccttgattagaaataa |
23550171 |
T |
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| Q |
109 |
gagagtgaag |
118 |
Q |
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|||| |||| |
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| T |
23550170 |
cagagagaag |
23550161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 30816736 - 30816842
Alignment:
| Q |
12 |
acagatcaagtaatgaaatgctatgggtaattgctaaagttctatcctcaccatattcctnnnnnnngaaagttaataattccttgattagaaataagag |
111 |
Q |
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||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||| || |
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| T |
30816736 |
acagagcaagtaatgaaaagctattggtaattgctaatgttctatcctcaccatattcctaaaaaaagaaagttaataattccatgattagtaataacag |
30816835 |
T |
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| Q |
112 |
agtgaag |
118 |
Q |
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||||||| |
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| T |
30816836 |
agtgaag |
30816842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 30835870 - 30835980
Alignment:
| Q |
8 |
gagcacagatcaagtaatgaaatgctatgggtaattgctaaagttctatcctcaccatattcctnnnnnnngaaagttaataattccttgattagaaata |
107 |
Q |
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||||||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||| |||| |
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| T |
30835870 |
gagcacagagcaagtaatgaaaagctattggtaattgctaatgttctatcctcaccatattcctaaaaaaaggaagttaataattccatgattagtaata |
30835969 |
T |
|
| Q |
108 |
agagagtgaag |
118 |
Q |
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| ||||||||| |
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| T |
30835970 |
acagagtgaag |
30835980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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