View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18583_high_37 (Length: 250)

Name: NF18583_high_37
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18583_high_37
NF18583_high_37
[»] chr3 (9 HSPs)
chr3 (1-232)||(9766544-9766771)
chr3 (101-159)||(46125392-46125450)
chr3 (180-216)||(46125456-46125492)
chr3 (101-156)||(21973436-21973491)
chr3 (101-156)||(21995867-21995922)
chr3 (22-71)||(46125321-46125370)
chr3 (183-231)||(21973503-21973551)
chr3 (183-231)||(21995934-21995982)
chr3 (101-133)||(22156540-22156572)
[»] chr5 (2 HSPs)
chr5 (4-232)||(21113949-21114173)
chr5 (101-132)||(38929695-38929726)
[»] chr8 (1 HSPs)
chr8 (4-232)||(43650747-43650971)
[»] chr2 (2 HSPs)
chr2 (4-159)||(24863179-24863325)
chr2 (180-216)||(24863331-24863367)
[»] scaffold0039 (3 HSPs)
scaffold0039 (180-216)||(82288-82324)
scaffold0039 (101-159)||(82330-82388)
scaffold0039 (22-71)||(82411-82460)
[»] chr6 (3 HSPs)
chr6 (180-216)||(19381579-19381615)
chr6 (101-159)||(19381621-19381679)
chr6 (22-71)||(19381702-19381751)
[»] chr7 (3 HSPs)
chr7 (101-132)||(3572772-3572803)
chr7 (101-159)||(9331452-9331510)
chr7 (183-231)||(9331519-9331567)
[»] chr4 (2 HSPs)
chr4 (101-159)||(39481194-39481252)
chr4 (183-231)||(39481261-39481309)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9766771 - 9766544
Alignment:
Q  1 ttatttaatcataaagaaatattggttatgctaagactcttaagtgaaagtataaatgaatgtaattcatattattattattannnnnnnnnnnnnnnng 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                 |    
T  9766771 ttatttaatcataaagaaatattggttatgctaagactattaagtgaaagtataaatgaatgtaattcatattattattatt----tttttttaaaaaag 9766676  T
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaatgtaaatcatactatttgatataagagatttgagttttgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9766675 aatgtaaatcatactcttgaaatggtggagtccacttcatcaacgcaaccactcttgaatgtaaatcatactatttgatataagagatttgagttttgtg 9766576  T
Q  201 ccatcatttttgaatagcaaattgggtatttg 232  Q
    ||||||||||||||||| ||||||||||||||    
T  9766575 ccatcatttttgaatagtaaattgggtatttg 9766544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 46125392 - 46125450
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaa 159  Q
    ||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||    
T  46125392 aatgtaaatcatactcttgaaatggcggagtccacttaaccaacgcaaccactcttgaa 46125450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 46125456 - 46125492
Alignment:
Q  180 ataagagatttgagttttgtgccatcatttttgaata 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  46125456 ataagagatttgagttttgtgccatcatttttgaata 46125492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 21973436 - 21973491
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactctt 156  Q
    ||||||||||||||| ||||||||||||||||| || || || ||||||| |||||    
T  21973436 aatgtaaatcatactattgaaatggtggagtccgctacaccagtgcaacctctctt 21973491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 21995867 - 21995922
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactctt 156  Q
    ||||||||||||||| ||||||||||||||||| || || || ||||||| |||||    
T  21995867 aatgtaaatcatactattgaaatggtggagtccgctacaccagtgcaacctctctt 21995922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 46125321 - 46125370
Alignment:
Q  22 ttggttatgctaagactcttaagtgaaagtataaatgaatgtaattcata 71  Q
    ||||| ||||||||||| |||||| ||||| ||||||||||||| |||||    
T  46125321 ttggtgatgctaagacttttaagttaaagtctaaatgaatgtaaatcata 46125370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 21973503 - 21973551
Alignment:
Q  183 agagatttgagttttgtgccatcatttttgaatagcaaattgggtattt 231  Q
    |||||| ||||||||||| ||||||||||||||| || || ||||||||    
T  21973503 agagatctgagttttgtgtcatcatttttgaataacagatggggtattt 21973551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 21995934 - 21995982
Alignment:
Q  183 agagatttgagttttgtgccatcatttttgaatagcaaattgggtattt 231  Q
    |||||| ||||||||||| ||||||||||||||| || || ||||||||    
T  21995934 agagatctgagttttgtgtcatcatttttgaataacagatggggtattt 21995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 22156540 - 22156572
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtcc 133  Q
    ||||||||||||||| |||||||||||||||||    
T  22156540 aatgtaaatcatactattgaaatggtggagtcc 22156572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 21113949 - 21114173
Alignment:
Q  4 tttaatcataaagaaatattggttatgctaagactcttaagtgaaagtataaatgaatgtaattcatattattattattannnnnnnnnnnnnnnngaat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||                  |||    
T  21113949 tttaatcataaagaaatcttggttatgctaagactcttaagtgaaagtataaatgaatgtaaatcatactatttttatttttttttaaaaaaa----aat 21114044  T
Q  104 gtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaatgtaaatcatactatttgatataagagatttgagttttgtgcca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21114045 gtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaatgtaaatcatactatttgatataagagatttgagttttgtgcca 21114144  T
Q  204 tcatttttgaatagcaaattgggtatttg 232  Q
    ||||||||||||| || || |||||||||    
T  21114145 tcatttttgaatatcagatggggtatttg 21114173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 38929695 - 38929726
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtc 132  Q
    ||||||||||||||||||||||||||||||||    
T  38929695 aatgtaaatcatactcttgaaatggtggagtc 38929726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 43650747 - 43650971
Alignment:
Q  4 tttaatcataaagaaatattggttatgctaagactcttaagtgaaagtataaatgaatgtaattcatattattattattannnnnnnnnnnnnnnngaat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||                  |||    
T  43650747 tttaatcataaagaaatcttggttatgctaagactcttaagtgaaagtataaatgaatgtaaatcatactatttttttttttaaaaaaaaaaa----aat 43650842  T
Q  104 gtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaatgtaaatcatactatttgatataagagatttgagttttgtgcca 203  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43650843 gtaaatcatactcttgaaatggtggagtccacttcatcaacacaaccactcttgaatgtaaatcatactatttgatataagagatttgagttttgtgcca 43650942  T
Q  204 tcatttttgaatagcaaattgggtatttg 232  Q
    |||||||||||||||| || |||||||||    
T  43650943 tcatttttgaatagcagatggggtatttg 43650971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 24863179 - 24863325
Alignment:
Q  4 tttaatcataaagaaatattggttatgctaagactcttaagtgaaagtataaatgaatgtaattcatattattattattannnnnnnnnnnnnnnngaat 103  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||| || | || ||                 ||||    
T  24863179 tttaatcataaagaaatcttggttatgctatgactcttaagtgatagtataaatgaatgtaaatcatactacttttttt---------tttagaaagaat 24863269  T
Q  104 gtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaa 159  Q
    |||||||| | |||||||||||||||| |||||||||||| |||||||||||||||    
T  24863270 gtaaatcacaatcttgaaatggtggagcccacttcatcaacgcaaccactcttgaa 24863325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 24863331 - 24863367
Alignment:
Q  180 ataagagatttgagttttgtgccatcatttttgaata 216  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24863331 ataagagatttgagttctgtgccatcatttttgaata 24863367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 82324 - 82288
Alignment:
Q  180 ataagagatttgagttttgtgccatcatttttgaata 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  82324 ataagagatttgagttttgtgccatcatttttgaata 82288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 82388 - 82330
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaa 159  Q
    ||||||||||||||||||||||||  ||||||||||| | |||  ||||||||||||||    
T  82388 aatgtaaatcatactcttgaaatgtcggagtccacttaaccaacacaaccactcttgaa 82330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 82460 - 82411
Alignment:
Q  22 ttggttatgctaagactcttaagtgaaagtataaatgaatgtaattcata 71  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||| |||||    
T  82460 ttggtgatgctaagacttttaagtgaaagtctaaatgaatgtaaatcata 82411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 19381615 - 19381579
Alignment:
Q  180 ataagagatttgagttttgtgccatcatttttgaata 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  19381615 ataagagatttgagttttgtgccatcatttttgaata 19381579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 19381679 - 19381621
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaa 159  Q
    ||||||||||||||||||||||||  ||||||||||| | |||  ||||||||||||||    
T  19381679 aatgtaaatcatactcttgaaatgtcggagtccacttaaccaacacaaccactcttgaa 19381621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 19381751 - 19381702
Alignment:
Q  22 ttggttatgctaagactcttaagtgaaagtataaatgaatgtaattcata 71  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||| |||||    
T  19381751 ttggtgatgctaagacttttaagtgaaagtctaaatgaatgtaaatcata 19381702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 3572772 - 3572803
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtc 132  Q
    ||||||||||||||||||||||||||||||||    
T  3572772 aatgtaaatcatactcttgaaatggtggagtc 3572803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 9331452 - 9331510
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaa 159  Q
    ||||||||||||||| ||||||||||||||||| || || ||  |||||| ||||||||    
T  9331452 aatgtaaatcatactattgaaatggtggagtccgctacaccagcgcaacctctcttgaa 9331510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 9331519 - 9331567
Alignment:
Q  183 agagatttgagttttgtgccatcatttttgaatagcaaattgggtattt 231  Q
    |||||| ||||||||||| ||||||||||||||| || || ||||||||    
T  9331519 agagatctgagttttgtgtcatcatttttgaataacagatggggtattt 9331567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 39481194 - 39481252
Alignment:
Q  101 aatgtaaatcatactcttgaaatggtggagtccacttcatcaatgcaaccactcttgaa 159  Q
    ||||||||||||||| ||||||||||||| ||| || || || ||||||| ||||||||    
T  39481194 aatgtaaatcatactattgaaatggtggattccgctacaccagtgcaacctctcttgaa 39481252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 39481261 - 39481309
Alignment:
Q  183 agagatttgagttttgtgccatcatttttgaatagcaaattgggtattt 231  Q
    |||||| ||||||||||| ||||||||||||||| || || ||||||||    
T  39481261 agagatatgagttttgtgtcatcatttttgaataacagatggggtattt 39481309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University