View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_43 (Length: 227)
Name: NF18583_high_43
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 2607417 - 2607606
Alignment:
| Q |
19 |
agaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaatgtactattcta |
118 |
Q |
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| T |
2607417 |
agaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaatgtactattcta |
2607516 |
T |
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| Q |
119 |
actt-caaggnnnnnnnnngttttgttattattatgctataataaggtcctgatgatgaaaattattcacagattattgctattaaggatatt |
210 |
Q |
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| T |
2607517 |
acttccaaggttttttta---ttttttattattatgctataataaggtcctgatgatgaaaattattcacagattattgctattaaggatatt |
2607606 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 41337932 - 41337854
Alignment:
| Q |
19 |
agaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatgga |
97 |
Q |
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| T |
41337932 |
agaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctccttcgtcacatgga |
41337854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 11057623 - 11057714
Alignment:
| Q |
19 |
agaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaatgta |
110 |
Q |
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| T |
11057623 |
agaagattggcaatgcatttgacaacagaatagatgctaaaaggaccttacgggaaataaaacttcttcgccatatggatcatgaaaatgta |
11057714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 29767879 - 29767788
Alignment:
| Q |
19 |
agaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaatgta |
110 |
Q |
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||||| ||| |||| |||||||||||| ||||||||||||||||| || | |||||||| |||| || |||||||| |||||||||||| |
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| T |
29767879 |
agaaggttggcaatgcatttgacaacagaattgatgctaaaaggaccttacgagaaattaaacttcagcggcacatggatcatgaaaatgta |
29767788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 34415912 - 34415999
Alignment:
| Q |
19 |
agaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtcacatggaccatgaaaa |
106 |
Q |
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| T |
34415912 |
agaagattgcaaatgcatttgacaacaagattgatgctaagaggactctccgtgaaatcaagctgcttcgccatatggatcatgaaaa |
34415999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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