View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_high_9 (Length: 424)
Name: NF18583_high_9
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 17885676 - 17885292
Alignment:
| Q |
20 |
ttaaattggcaccctttatttcaaatcactaactattctattcaccactattaataaaacaaaattagtagaatttaactcattttatcttattttgtac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17885676 |
ttaaattggcaccctttatttcaaatcactaactattctattcaccactattaataaaacaaaattagtagaatttaactcattttatcttattttgtac |
17885577 |
T |
|
| Q |
120 |
acactcaacgattctcttaagaaatgtacataatcttaaaaatacttaatatgagacagacatattactagtactaacatgctaaaacttgtcat-caaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || | |||| |
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| T |
17885576 |
acactcaacgattctcttaagaaatgtacataatcttaaaaatacttaatatgagacagacaaattactagta------tgctaaaacttctccttcaaa |
17885483 |
T |
|
| Q |
219 |
aaatattacctgttttgttgtcttaggttgtcaagttccctagcaaggtcatcccagtaaagattgctacctccttcaatgtcaaaatcaataccatcta |
318 |
Q |
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||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17885482 |
aaacattacctgttttgttgtcttagattgtcaagattcctagcaaggtcatcccagtaaagattgctacctccttcaatgtcaaaatcaataccatcta |
17885383 |
T |
|
| Q |
319 |
aggtaacacttccaagtggaccaaattgaccactaagaaagttagtaaagaggtaatcagcaacatttttagcatcctccggtgagctaag |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
17885382 |
aggtaacacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatcagcaacatttttagcatcgtctggtgagctaag |
17885292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 120 - 409
Target Start/End: Complemental strand, 17845230 - 17844940
Alignment:
| Q |
120 |
acactcaacgattctcttaagaaatgtacataatcttaaaaatacttaatatgagacagacatattactagtactaacatgctaaaacttgtcat-caaa |
218 |
Q |
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|||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||| |||| | |||||||| |||||||||||||||| |||| |||| |
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| T |
17845230 |
acactcaatgatgctcttaagaaatggacataatcttaaaaatacataatatgagacggacaaactactagtattaacatgctaaaacttctcattcaaa |
17845131 |
T |
|
| Q |
219 |
aaatattacctgttttgttgtcttaggttgtcaagttccctagcaaggtcatcccagtaaagattgctacctccttcaatgtcaaaatcaataccatcta |
318 |
Q |
| |
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||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17845130 |
aaacattacctgttttgttgtcttagattgtcaagattcctagcaaggtcatcccagtaaagatcgctacctccttcaatgtcaaaatcaataccatcta |
17845031 |
T |
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| Q |
319 |
aggtaacacttccaagtggaccaaattgaccactaagaaagttagtaaagaggtaatcagcaacatttttagcatcctccggtgagctaag |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
17845030 |
aggtaacacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatcagcaacatttttagcatcgtctggtgagctaag |
17844940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 198 - 409
Target Start/End: Original strand, 17820862 - 17821077
Alignment:
| Q |
198 |
atgctaaaacttgtcat-caaaaaatattacctgttttgttgtcttaggttgtcaagttccctagcaaggtcatcccagtaaagattgctacc---tcct |
293 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
17820862 |
atgctaaaacttttcattcaaaaaatattacctgttttgttgtcttaggttgtcaagttccctagcaaggtcatcccagtaaagatttgtagcagctcct |
17820961 |
T |
|
| Q |
294 |
tcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtaaagaggtaatcagcaacatttttagcat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| | |
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| T |
17820962 |
tcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtatagaggtaatcagaaagatttttagctt |
17821061 |
T |
|
| Q |
394 |
cctccggtgagctaag |
409 |
Q |
| |
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| |||| |||| |||| |
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| T |
17821062 |
cttccgatgagttaag |
17821077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 189 - 409
Target Start/End: Original strand, 17861034 - 17861254
Alignment:
| Q |
189 |
agtactaacatgctaaaacttgtca-tcaaaaaatattacctgttttgttgtcttaggttgtcaagttccctagcaaggtcatcccagtaaagattgcta |
287 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17861034 |
agtactatcatgctaaaacttgtcattcaaaaaata-tacctgttttgttgtcttaggttgtcaagttccctagcaaggtcatcccagtaaagatttgta |
17861132 |
T |
|
| Q |
288 |
cctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtaaagaggtaatcagcaacatttt |
387 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||| | || |||||||||||||||| |
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| T |
17861133 |
cctccttcaatgtcaaaatcaattccatctaaggtaacacttccaagtggaccggattgaccactaaggaacttagcatttagataatcagcaacatttt |
17861232 |
T |
|
| Q |
388 |
tagcatcctccggtgagctaag |
409 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
17861233 |
tagcatcctctggtgagctaag |
17861254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 17860754 - 17860892
Alignment:
| Q |
9 |
gacatcatcaattaaattggcaccctttatttcaaatcactaactattctattca---ccactattaataaaacaaaattagtagaatttaactcatttt |
105 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||| |||||| | |||||||||||||||||||| || || |||| | |||||||| |
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| T |
17860754 |
gacatcatcaactaaattggcaccccttatttcaaaccactaactactctattaataaccactattaataaaacaaaactaataaaattaagctcatttt |
17860853 |
T |
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| Q |
106 |
atcttattttgtacacactcaacgattctcttaagaaatgt |
146 |
Q |
| |
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|||||||||||| ||| |||| |||||||||||||||||| |
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| T |
17860854 |
atcttattttgt--acattcaatgattctcttaagaaatgt |
17860892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 296 - 409
Target Start/End: Complemental strand, 17904802 - 17904689
Alignment:
| Q |
296 |
aatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtaaagaggtaatcagcaacatttttagcatcc |
395 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || |||| | || ||||||||||||||||||||||| |
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| T |
17904802 |
aatggcaaaatcaattccatctaaggtaacacttccaagtggaccagattgaccactaaggaacttagcatttagataatcagcaacatttttagcatca |
17904703 |
T |
|
| Q |
396 |
tccggtgagctaag |
409 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
17904702 |
tctggtgagctaag |
17904689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 17820588 - 17820722
Alignment:
| Q |
9 |
gacatcatcaattaaattggcaccctttatttcaaatcactaactattctattcaccactattaataaaacaaaattagtagaatttaactcattttatc |
108 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| |||||| || |||||| ||||||||||||||||||| | || || |||| | ||||||||||| |
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| T |
17820588 |
gacatcatcaactaaattggcaccccttatttcaaaccactaa-tactctattaaccactattaataaaacaagactaataaaattaacctcattttatc |
17820686 |
T |
|
| Q |
109 |
ttattttgtacacactcaacgattctcttaagaaatgt |
146 |
Q |
| |
|
||||||||| ||| |||| |||| ||||||||||||| |
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|
| T |
17820687 |
ttattttgt--acattcaatgattatcttaagaaatgt |
17820722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 287 - 397
Target Start/End: Complemental strand, 17914828 - 17914718
Alignment:
| Q |
287 |
acctccttcaatgtcaaaatcaataccatctaaggtaacacttccaagtggaccaaattgaccactaagaaagttagtaaagaggtaatcagcaacattt |
386 |
Q |
| |
|
|||||||| ||| || ||| |||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||||| || |||| ||| |||||| |
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| T |
17914828 |
acctccttgaatatccaaactaataccatttaaagtaacacttccaagtggaccaaattgaccattaaggaagttagtaaatagataattagctacattt |
17914729 |
T |
|
| Q |
387 |
ttagcatcctc |
397 |
Q |
| |
|
||||||||||| |
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|
| T |
17914728 |
ttagcatcctc |
17914718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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