View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_1 (Length: 650)
Name: NF18583_low_1
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 177 - 632
Target Start/End: Complemental strand, 29339225 - 29338782
Alignment:
| Q |
177 |
agcaaaaacccttttgatatgaatacaattggccctttgaagggttatttctttatattattatcctctgatgactttcaattaattataatatttggag |
276 |
Q |
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| T |
29339225 |
agcacaaacccttttgatatgaatacaattggccctttgaagggttatttctttatattattagcctttgatgactttcaattaattataatatttggag |
29339126 |
T |
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| Q |
277 |
agtctattttgaatataatataattgatatgaatgcagtatattgattttgaagaaaactaaccagaggaataatagccagacttattaaaaggtctatc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
29339125 |
agtctattttgaatataatataattgatatgaatgcagtatattgagtttgaagaaaactaaccaaaggaatgatagccagacttattaaacggtctatc |
29339026 |
T |
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| Q |
377 |
taagtatctactatctagtaaacaagcaagtacatttggtacatatatatgattgaat-aatataatttcattttttggtgtgcatgacaaaacaggtgc |
475 |
Q |
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| T |
29339025 |
taagta-------tctagtaaacaagcaagtacatttgg----tatatataattgaataaatataatttcattttttggggtgcatgacacaacaggtgc |
29338937 |
T |
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| Q |
476 |
atagctagccactagcc--acttatatcatatgcagaacatgacaaagnnnnnnnnnnnnnnnnnggattacaagatgcttaaaccgctgaaaagaaaaa |
573 |
Q |
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| T |
29338936 |
a----tagccactagccagacttatatcatatgcagaacatgacaaaggttttttcttcttttttggattacaagatgcttaaaccactgaaaagaaaaa |
29338841 |
T |
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| Q |
574 |
ctaacgattaattaaacgacgtgtagaaacacaaataaaatcaaataattcaactcact |
632 |
Q |
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| T |
29338840 |
ctaacgtttaattaaacgacgtgcagaaacacaaataaaatcaaataattcaactcact |
29338782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 177 - 374
Target Start/End: Original strand, 29343691 - 29343888
Alignment:
| Q |
177 |
agcaaaaacccttttgatatgaatacaattggccctttgaagggttatttctttatattattatcctctgatgactttcaattaattataatatttggag |
276 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29343691 |
agcacaaacccttttgatatgaatacaattggccctttgaagggttatttctttatattattatcctttgatgactttcaattaattataatatttggag |
29343790 |
T |
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| Q |
277 |
agtctattttgaatataatataattgatatgaatgcagtatattgattttgaagaaaactaaccagaggaataatagccagacttattaaaaggtcta |
374 |
Q |
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| T |
29343791 |
agtctattttgaatataatataattgatatgaatgcagtatattgattttgaagaaaactaaacaaaggaataatagccagacttattaaacggtcta |
29343888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 29339359 - 29339225
Alignment:
| Q |
9 |
gaagaaaatcaatttatagagggaagtacgtacttacattttcttatctatgggtaacctaaacaatttccacacttttaattaaggccaaacttttgac |
108 |
Q |
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| T |
29339359 |
gaagaatatcaatttatagagggaagtacgtacttacattttcttatctatgggtaacctaaacaatttccacacttttaattaaggccaaacttttgac |
29339260 |
T |
|
| Q |
109 |
caatatgcaatacaattggcatgttgtcaccaaga |
143 |
Q |
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| T |
29339259 |
caatatgcaatacaattggcatgttgtcaccaaga |
29339225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 29343566 - 29343691
Alignment:
| Q |
16 |
atcaatttatagagggaagtacgtacttacattttcttatctatgggtaacctaaacaatttccacacttttaattaaggccaaacttttgaccaatatg |
115 |
Q |
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| T |
29343566 |
atcaatttatagaggatagtacgtgcttaatttttcttatctatgggtaacctaaaaaaatttcac--ttttaattaaggccaaacttttgaccaatatg |
29343663 |
T |
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| Q |
116 |
caatacaattggcatgttgtcaccaaga |
143 |
Q |
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| T |
29343664 |
caatacaattggcatgttgtcaccaaga |
29343691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 632
Target Start/End: Original strand, 29344258 - 29344316
Alignment:
| Q |
575 |
taacgattaattaaacgacgtgtaga-aacacaaataaaatcaaataattcaactcact |
632 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29344258 |
taacgtttaattaaacgacgtgtagataacacaaataaaatcaaataattcaactcact |
29344316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 29343939 - 29343976
Alignment:
| Q |
539 |
ggattacaagatgcttaaaccgctgaaaagaaaaacta |
576 |
Q |
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| T |
29343939 |
ggattacaagatgcttaaaccgctgaaaagaaaaacta |
29343976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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