View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_12 (Length: 397)
Name: NF18583_low_12
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 37619847 - 37620157
Alignment:
| Q |
19 |
caaagcacatttactgttgatgactatgtgcaaacattgatcttcacatcattacctactagccattgaatggaagagatacagattctatgcctatagt |
118 |
Q |
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| T |
37619847 |
caaagcacatttactgttgatgactatgtgcaaacattgatcttcacatcattacctactagccattgaatggaagagatacaaattctatgcctatagt |
37619946 |
T |
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| Q |
119 |
attttatttgaaaaatagggaaacatgtaatgcttataaaaaataacttgtagattgnnnnnnntaaaattataaatgacatatttttgtcatggacctt |
218 |
Q |
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| T |
37619947 |
attttatttgaaaaatagggaaacatgtaatgcttataaaaaataacttgtagattgaaaaaaataaaattataaatgacatatttttgtcatggacctt |
37620046 |
T |
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| Q |
219 |
attgtttattatatataagactgcagtcttatggctaagtagaaataatgctacaagaattatgaactattttgtttagcttgggaggaattaaccagta |
318 |
Q |
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| T |
37620047 |
attgtttattatataaaagactgcagtcttatggctaagtagaaataatgctacaagaattatgaactattttgtttagcttgggaggaattaaccagta |
37620146 |
T |
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| Q |
319 |
accaccatatt |
329 |
Q |
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| T |
37620147 |
accaccatatt |
37620157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 37628147 - 37628232
Alignment:
| Q |
19 |
caaagcacatttactgttgatgactatgtgcaaacattgatcttcacatcattaccta----ctagccattgaatggaagagatac |
100 |
Q |
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| T |
37628147 |
caaagcacatttactgttgatgactatgtgcaaacattgatcttcacatcgtttcctaattcctagccattgaattgaagagatac |
37628232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 37620208 - 37620269
Alignment:
| Q |
328 |
ttaacaagagcaaaattggtatacctctatgaaattgataagggacacaatcttttttgatg |
389 |
Q |
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| T |
37620208 |
ttaacaagagcaaaattggtatacctctatgaaattgataagggatgcgatcttttttgatg |
37620269 |
T |
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