View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18583_low_15 (Length: 366)
Name: NF18583_low_15
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 359813 - 360160
Alignment:
| Q |
1 |
tggttttttggccttaagccataaggcacaaggaatctgtatcacgtatttcaaatttagtaagaagatattaatacatgaagatatttaaagggatgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
359813 |
tggttttttggccttaagccataaggcacaaggtatctgtatcacgtatttcaaatttagtaagaagatattaatacatgaagatatttaaagggatgct |
359912 |
T |
|
| Q |
101 |
taataacaaatattaattcttacaatatatgatgttgctgcaaatgctagtcctccaaaaaaccctaacaagcctccaaaaaatgggaagcttacagcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
359913 |
taataacaaatattaattcttacaatatatgatgttgctgcaaatgctagtcctccaaaaaaccctaacaagcctccaaaaaatgggaagcttacagcaa |
360012 |
T |
|
| Q |
201 |
ccaatccaactagaactgtaaagaaatgaaaatttcatattaaattaaatatacatgcatacatatctcaatttattgtcaataatatatgcttcgagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
360013 |
ccaatccaactagaactgtaaagaaatgaaaatttcatattaaattaaat------------ataactcaatttattgtcaataatatatgcttcgagca |
360100 |
T |
|
| Q |
301 |
acgacacgaaaatgtcatatatttaacacaatattgatcttaccgacatatattcttcga |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
360101 |
acgacacgaaaatgtcatatatttaacacaatattgatcttaccgacatatatgcttcga |
360160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University