View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18583_low_16 (Length: 366)
Name: NF18583_low_16
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 40918214 - 40918550
Alignment:
| Q |
17 |
agatagtctaagtcctaacactatatgtgtactagacatgatgaattttgacaagaacataacaataacaatagataggaaaaggaacgaacccgtataa |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40918214 |
agatagtctaagtcctaccactatatgtgtactagacatgatgaattttgacaagaacataacaataacaatagataggaaaaggaacgaacccgtataa |
40918313 |
T |
|
| Q |
117 |
gttttgtgcaatggaaaagggtaatcgtcgaaaaagtagtgtagagtaatgttggttgaattaagagcctctttgtcgacgacatcaccataagcgcgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40918314 |
gttttgtgcaatggaaaagggtaatcgtcgaaaaaggagtgtagagtaatgttggttgaattaagagcctctttgtcgacgacatcaccataagcgcgaa |
40918413 |
T |
|
| Q |
217 |
tacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgggacagctgtcaat |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40918414 |
tacgaattgtacccataatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgggacagctgtcaat |
40918513 |
T |
|
| Q |
317 |
gtgccaccatactgatactgaaaccttgggaggagaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
40918514 |
gtgccaccatactgatactgaaaccttgggaggagaa |
40918550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 331
Target Start/End: Complemental strand, 53729817 - 53729690
Alignment:
| Q |
204 |
ccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgg |
303 |
Q |
| |
|
|||||| |||| |||| |||| | ||| |||| ||||||||||||| ||||||||||||||||||| ||||||| ||| |||||| |||||| ||||||| |
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| T |
53729817 |
ccataaacgcggatactaattctgcccataattccgttagctctaagggctgccgtaattgaaggttctaccttcgaatagctaaccccagaaggcacgg |
53729718 |
T |
|
| Q |
304 |
gacagctgtcaatgtgccaccatactga |
331 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |
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|
| T |
53729717 |
gagagctgtcaaggtgccaccatactga |
53729690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 49542284 - 49542358
Alignment:
| Q |
260 |
aattgaaggtgctaccttggaaaagctaaacccagagggcacgggacagctgtcaatgtgccaccatactgatac |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
49542284 |
aattgaaggtgctaccttggaaaagctaaacccagaaggcacgggacagctgtcaaggtgccaccatactgatac |
49542358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 41783181 - 41783286
Alignment:
| Q |
226 |
tacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgggacagctgtcaatgtgccacca |
325 |
Q |
| |
|
||||| |||||||||| ||||||| ||| ||||| |||||||||||||||| ||| |||||| |||||| |||||| ||||||||||| ||||||||| |
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|
| T |
41783181 |
tacccataatcccgttcgctctaagggcaaccgtagttgaaggtgctaccttcgaatagctaatcccagaaggcacgacacagctgtcaaggtgccacca |
41783280 |
T |
|
| Q |
326 |
tactga |
331 |
Q |
| |
|
|||||| |
|
|
| T |
41783281 |
tactga |
41783286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 41783110 - 41783151
Alignment:
| Q |
155 |
gtgtagagtaatgttggttgaattaagagcctctttgtcgac |
196 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
41783110 |
gtgtagagaaaagttggttgaattaagagcctctttgtcgac |
41783151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 49542116 - 49542147
Alignment:
| Q |
44 |
tgtactagacatgatgaattttgacaagaaca |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49542116 |
tgtactagacatgatgaattttgacaagaaca |
49542147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 49542230 - 49542269
Alignment:
| Q |
157 |
gtagagtaatgttggttgaattaagagcctctttgtcgac |
196 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
49542230 |
gtagagtaatgttgtttgaaataagagcctctttgtcgac |
49542269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 97 - 331
Target Start/End: Complemental strand, 2883259 - 2883028
Alignment:
| Q |
97 |
aaaggaacgaacccgtataagttttgtgcaatgg-aaaagggtaatcgtcgaaaaagtagtgtagagtaatgttggttgaattaagagcctctttgtcga |
195 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2883259 |
aaaggaacgaacccttatatcttttgtg-aatgccaaaagggtaatcgtcggaaaaggagtgtagagtaatgttggttgaattaaaagcctctttgtcga |
2883161 |
T |
|
| Q |
196 |
cgacatcaccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccaga |
295 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2883160 |
c---atcaccataagcgtgaatatgaattgtacccataattccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccctga |
2883064 |
T |
|
| Q |
296 |
gggcacgggacagctgtcaatgtgccaccatactga |
331 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
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|
| T |
2883063 |
gggcacgggacagctgtcaaggtgccaccatactga |
2883028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 131 - 331
Target Start/End: Original strand, 3151336 - 3151533
Alignment:
| Q |
131 |
aaaagggtaatcgtcgaaaaagtagtgtagagtaatgttggttgaattaagagcctctttgtcgacgacatcaccataagcgcgaatacgaattgtaccc |
230 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| |||| |
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|
| T |
3151336 |
aaaagggtaatcatcggaaaaggagtgtagagtaatgttggttgaattaaaagcctctttgtcgac---atcaccataagcgtgaatatgaattgcaccc |
3151432 |
T |
|
| Q |
231 |
gtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgggacagctgtcaatgtgccaccatactg |
330 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3151433 |
ataattccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgggacagctgtcaaggtgccaccatactg |
3151532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 2884819 - 2884693
Alignment:
| Q |
204 |
ccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagggcacgg |
303 |
Q |
| |
|
||||||||| |||| |||||| ||| |||||||||| ||||||| || || |||||||||||||||| || ||||||||| || ||||| ||| |
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|
| T |
2884819 |
ccataagcgtcaatatgaattgggcccttaatcccgttggctctaagaactcccataattgaaggtgctacattcaaaaagctaatgccggaggggacgc |
2884720 |
T |
|
| Q |
304 |
gacagctgtcaatgtgccaccatactg |
330 |
Q |
| |
|
||||||||||| || ||||||||||| |
|
|
| T |
2884719 |
cacagctgtcaaagtcccaccatactg |
2884693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 3149741 - 3149873
Alignment:
| Q |
198 |
acatcaccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaacccagagg |
297 |
Q |
| |
|
||||| ||||||||| |||| |||||| ||| |||||||||| ||||||| || || |||||||||||||||| || ||||||||| || |||| |
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|
| T |
3149741 |
acatcgccataagcgtcaatatgaattgggcccttaatcccgttggctctaagaactcccataattgaaggtgctacattcaaaaagctaatgccggagg |
3149840 |
T |
|
| Q |
298 |
gcacgggacagctgtcaatgtgccaccatactg |
330 |
Q |
| |
|
| ||| |||||| |||| || ||||||||||| |
|
|
| T |
3149841 |
ggacgccacagctatcaaagtcccaccatactg |
3149873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 29250784 - 29250641
Alignment:
| Q |
155 |
gtgtagagtaatgttggttgaattaagagcctctttgtcgac------------gacatcaccataagcgcgaatacgaattgtacccgtaatcccgtta |
242 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| | ||| |||||||| |||||| |||| ||||| ||||||||||| |
|
|
| T |
29250784 |
gtgtagagaaatgtttgttgaattaagagcctctttgtcgacctcagaagaattaaaatcgccataagcacgaatatgaatattacccataatcccgtta |
29250685 |
T |
|
| Q |
243 |
gctctaacggctgccgtaattgaaggtgctaccttggaaaagct |
286 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
29250684 |
gctctaagggcagccgtaattgaaggtgctaccttcgaatagct |
29250641 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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