View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18583_low_17 (Length: 364)
Name: NF18583_low_17
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 7131609 - 7131941
Alignment:
| Q |
18 |
acaatgtacagtgtctagtgttcatgtaattaactgctgtagtgatcaagatgataagttggatgtaaaaaatgtggcatcagaattgtagacagataat |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
7131609 |
acaatgtatagtgtctagtgttcatgtaattaactgctgtagtgatcaagatgataagttggatgtaaaaaatgtggcatcaggaatgtagacagataat |
7131708 |
T |
|
| Q |
118 |
gataacagtgtcaaatcatgcaaagatagtcatatatcgattgtttggagctagccttccatgcctgaggaagaagacattagttgggatgaaattaaag |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131709 |
gataacagtgtcgaatcatgcaaagatagtcatatatcgattgtttggagctagccttccatgcctgaggaagaagacattagttgggatgaaattaaag |
7131808 |
T |
|
| Q |
218 |
atg-tgaaagcaatgatgtaagtagaggggatgctggtgggtctgaaagtaagattgacttgcggaaaaggttgagtgcagtagctacggctgattaaga |
316 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7131809 |
atgttgaaagcaatgatgtaagtagaggggatgctggtgggtctgaaagtaagattgacttgcggaaaaggttgagtgc---agctacggctgattaaga |
7131905 |
T |
|
| Q |
317 |
tgaggatctcagttgggatattgaagacaatgatga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131906 |
tgaggatctcagttgggatattgaagacaatgatga |
7131941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 58 - 352
Target Start/End: Original strand, 7123256 - 7123548
Alignment:
| Q |
58 |
agtgatcaagatgataagttggatgtaaaaaatgtggcatcagaattgtagacagataatgataacagtgtcaaatcatgcaaagatagtcatatatcga |
157 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| || || |||||||||||||||||| ||||||||||||||||| |||| || | |
|
|
| T |
7123256 |
agtgatcaagatgataagttggatataaaaaatgtggcatccgaagtgaaggcagataatgataacagtggtgaatcatgcaaagatagtgatatttcaa |
7123355 |
T |
|
| Q |
158 |
ttgtttggagctagccttccatgcctgaggaagaagacattagttgggatgaaattaaagatg-tgaaagcaatgatgtaagtagaggggatgctggtgg |
256 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
7123356 |
ttgtttcaagccagccttccatgcccgaggaagaagacattagttgggatgaaattgaagatgttgaaaccaatgatgaaaagagaggggatgctggtgc |
7123455 |
T |
|
| Q |
257 |
gtctgaaagtaagattgacttgcggaaaaggttgagtgcagtagctacggctgattaagatgaggatctcagttgggatattgaagacaatgatga |
352 |
Q |
| |
|
|||||||||||||||||| |||| ||| || |||||||| || || |||||| ||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
7123456 |
gtctgaaagtaagattgatttgcagaagagattgagtgc---ggcaactgctgatgaagatgaggatcttagttgggatattgaagaagatgatga |
7123548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University