View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_22 (Length: 351)
Name: NF18583_low_22
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_22 |
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| [»] scaffold0595 (3 HSPs) |
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Alignment Details
Target: scaffold0595 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 996 - 875
Alignment:
| Q |
16 |
atctaaaaataaaacagattacaaaatgctcaagcctttgatttcttagcaatttaaagacaatatcaaattaaagatagactaaaaacgttcaattaag |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
996 |
atctaaaaataaaacagattacaaaatgttcaagcctttgatttcttagcaatttaaagacaatatcaaattaaagatagactaaaaacgttcaattaag |
897 |
T |
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| Q |
116 |
ttttctattatatgtgtaaccc |
137 |
Q |
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|||||||||||||||||||||| |
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| T |
896 |
ttttctattatatgtgtaaccc |
875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 345 - 265
Alignment:
| Q |
239 |
attacatactttattagaacaaaatgaattatcggcgacaaaaatataaattttcatctttaatttttgttgcttgttata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
345 |
attacatactttattagaacaaaatgaattatcggcgacaaaaatataaattttcatctttaatttttgttgcttgttata |
265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 591 - 488
Alignment:
| Q |
150 |
ctatccatggctacaaatgccaagaacttgaagtaagaattccaaacataatcnnnnnnntt-aacatgcat-aatttgcaatgg-tttttaattacata |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||||| |
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| T |
591 |
ctatccatggctacaaatgccaagaacttgaagtaagaattccaaacataatcaaaaaaattaaacatgcataaatttgcaatggttttttaattacata |
492 |
T |
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| Q |
247 |
cttt |
250 |
Q |
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|||| |
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| T |
491 |
cttt |
488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 8329037 - 8329158
Alignment:
| Q |
16 |
atctaaaaataaaacagattacaaaatgctcaagcctttgatttcttagcaatttaaagacaatatcaaattaaagatagactaaaaacgttcaattaag |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8329037 |
atctaaaaataaaacagattacaaaatgttcaagcctttgatttcttagcaatttaaagacaatatcaaattaaagatagactaaaaacgttcaattaag |
8329136 |
T |
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| Q |
116 |
ttttctattatatgtgtaaccc |
137 |
Q |
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|||||||||||||||||||||| |
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| T |
8329137 |
ttttctattatatgtgtaaccc |
8329158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 8329686 - 8329766
Alignment:
| Q |
239 |
attacatactttattagaacaaaatgaattatcggcgacaaaaatataaattttcatctttaatttttgttgcttgttata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8329686 |
attacatactttattagaacaaaatgaattatcggcgacaaaaatataaattttcatctttaatttttgttgcttgttata |
8329766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 8329442 - 8329542
Alignment:
| Q |
150 |
ctatccatggctacaaatgccaagaacttgaagtaagaattccaaacataatcnnnnnnnttaacatgcataatttgcaatggtttttaattacatactt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8329442 |
ctatccatggctacaaatgccaagaacttgaagtaagaattccaaacataatcaaaaaaattaacatgcataatttgcaatggtttttaattacatactt |
8329541 |
T |
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| Q |
250 |
t |
250 |
Q |
| |
|
| |
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|
| T |
8329542 |
t |
8329542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 8336692 - 8336732
Alignment:
| Q |
150 |
ctatccatggctacaaatgccaagaacttgaagtaagaatt |
190 |
Q |
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||||||||||||||||||| |||||| ||||||||||||| |
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| T |
8336692 |
ctatccatggctacaaatgtgaagaacatgaagtaagaatt |
8336732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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