View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_23 (Length: 351)
Name: NF18583_low_23
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_23 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 41756914 - 41756564
Alignment:
| Q |
1 |
aatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaagatcacgaccacggtaaactttggttagtaagtaat |
100 |
Q |
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| T |
41756914 |
aatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaagatcacgaacacggtaaactttggttagtaagtaat |
41756815 |
T |
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| Q |
101 |
tgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaatcatggcaagaaagcatgaaatgatcagctccaagg |
200 |
Q |
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| T |
41756814 |
tgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaatcatggcaagaaagcatgaaatgatcagctccaagg |
41756715 |
T |
|
| Q |
201 |
cttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttatgggactaaaatcatgagaatcgcgtacatagacaa |
300 |
Q |
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| T |
41756714 |
cttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttatgggactaaaatcatgagaatcgcgtacatagacaa |
41756615 |
T |
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| Q |
301 |
attggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttct |
351 |
Q |
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| T |
41756614 |
attggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttct |
41756564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 351
Target Start/End: Complemental strand, 41764699 - 41764506
Alignment:
| Q |
158 |
tacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggtt |
257 |
Q |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatatttttcggaaaggacattgatgtagtctttgacggtt |
41764600 |
T |
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| Q |
258 |
ttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttct |
351 |
Q |
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| T |
41764599 |
atccttaagaggtcataagcacgagagtctcgtacatagacataatggaccatcattgctacactataagaaaggaaaaatacatgtgccttct |
41764506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 26973807 - 26973983
Alignment:
| Q |
159 |
acccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttt |
258 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||| | | || |||||||||||||| |||| |||| |
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| T |
26973807 |
acccagtcatggcaagctagcatgaaatgatcagctccaaggcttctattccaatatggatattttccagcaatgacattgatataatccgtgacagttt |
26973906 |
T |
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| Q |
259 |
tccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaa |
335 |
Q |
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| T |
26973907 |
ttcttataggtccaaagtcacgagagtcccttaaataaacgaatcggaccaacattaccacactgaacggaaggaaa |
26973983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 36806159 - 36806120
Alignment:
| Q |
158 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
197 |
Q |
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| T |
36806159 |
tacccaatcatgacaagaaagcatgaaatgatcagctcca |
36806120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 36515067 - 36515106
Alignment:
| Q |
158 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
197 |
Q |
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| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
36515106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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