View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_24 (Length: 350)
Name: NF18583_low_24
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 6265401 - 6265092
Alignment:
| Q |
23 |
aaaacagtttcttcatgctagtttttgggttgaatttaatgaaatttgaattctaaagttttgatatttttatacatttcttgaatctgtagccactgtt |
122 |
Q |
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| T |
6265401 |
aaaacagtttcttcatgctagttttggtgttgaatttaatggaacttgaattctaaaattttgatatttttatacatttcttgaatctttagccactgtt |
6265302 |
T |
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| Q |
123 |
tttggccaactttggagattggaaccactttcaccagaaaagaaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttg |
222 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6265301 |
tttggccaactttggagattggaacctctgtcaccagagaagaaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttg |
6265202 |
T |
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| Q |
223 |
aatttaagcctacttggcaaacatttccagatggaagcaggtttgaggtacaagtataactttggaaagaattttaatgtgaacttatacaggggtatga |
322 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6265201 |
aattcaagcctacttggcaaacatttccagatggaagcaggtttgaggtacaagtataactttagaaagaattttaatgtgaacttatacaggggtatga |
6265102 |
T |
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| Q |
323 |
agtatctgtg |
332 |
Q |
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|||||||||| |
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| T |
6265101 |
agtatctgtg |
6265092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 23782904 - 23782808
Alignment:
| Q |
165 |
aaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttggcaaacatttccagatggaagca |
261 |
Q |
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| T |
23782904 |
aaagcaatgtggcgaagagagatggagtggtttctttctgttagtgatcatattgttgaattaacgcctaattggcagacttttcctgatggaagca |
23782808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 31129855 - 31129767
Alignment:
| Q |
170 |
aatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttggcaaacatttccagatggaa |
258 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| | ||| |||||||||||||||| ||||||| |
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| T |
31129855 |
aatgtggcaaagagagatggaatggcttgttagtgttagtgatcacattgttgaattaataccttcttggcaaacatttcctgatggaa |
31129767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 34864710 - 34864613
Alignment:
| Q |
159 |
gaaaagaaagcaatgtggcaaagagagatggaatggcttctttgtgttagtgatcatattgttgaatttaagcctacttggcaaacatttccagatgg |
256 |
Q |
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| T |
34864710 |
gaaaagaaagaaaagtggcagagagaaatggattggcttctttgtgttggtgatcacattgttgagttaatgccttcttggcaaacatatccagatgg |
34864613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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