View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_25 (Length: 345)
Name: NF18583_low_25
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 50555721 - 50555409
Alignment:
| Q |
10 |
aatataaaacaataagatagttgaggttttgtaacaaggataagatctgagcatatttggtgaaactttgcctgatgattcctgccaggtgtttggcaca |
109 |
Q |
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| T |
50555721 |
aatataaaacaataagatagttgaggttttgtaacaaggataagatctgagcatatttggtgaaactttgcctgatgattcctgccaggtgtttggcaca |
50555622 |
T |
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| Q |
110 |
agaattcactgaatgaatgcaactggacctaaaacaatattaattaataataattgtaattaaacgtagatgaagaacaaacataacagagtagcattca |
209 |
Q |
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| T |
50555621 |
agaat---------gagtgcaactggacctaaaacaatattaattaataataattgtaattaaacgtagatgaagaacaaacataacagagtagcattca |
50555531 |
T |
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| Q |
210 |
tcatggtattgctgttatcaactctaattttaaaagggaaac----attagctacacataatctttcatggcattgtattgagtgatatgacaaagtgag |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
50555530 |
tcatggtattgctcttatcaactctaattttaaaagggaaacattaattagctacacataatctgtcatggcattgtattgagtgatatgaaaaagtgag |
50555431 |
T |
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| Q |
306 |
aggttaattttctcacaataaa |
327 |
Q |
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|||||||||||||||||||||| |
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| T |
50555430 |
aggttaattttctcacaataaa |
50555409 |
T |
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