View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18583_low_27 (Length: 318)
Name: NF18583_low_27
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_27 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: scaffold0425 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 11323 - 11629
Alignment:
| Q |
12 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaagatatttcacttacttttataaaggtcttctgaaact |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11323 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaaaatatttcacttacttttataaaggtcttctgaaact |
11422 |
T |
|
| Q |
112 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgtttacgctgattgtctgtttttcttctt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11423 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatctttattattctgtttacgctgattgtctgtttttcttctt |
11522 |
T |
|
| Q |
212 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaatcaattacatggtgaggatgtcatgtggccttttaccgtgac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11523 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgtcatgtggccttttaccgtgat |
11622 |
T |
|
| Q |
312 |
tttcatt |
318 |
Q |
| |
|
||||||| |
|
|
| T |
11623 |
tttcatt |
11629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 6526616 - 6526922
Alignment:
| Q |
12 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaagatatttcacttacttttataaaggtcttctgaaact |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6526616 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatatttcacttacttttataaaggtcttctaaaact |
6526715 |
T |
|
| Q |
112 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgtttacgctgattgtctgtttttcttctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6526716 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgtttacgctgattgtctgtttttcttctt |
6526815 |
T |
|
| Q |
212 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaatcaattacatggtgaggatgtcatgtggccttttaccgtgac |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6526816 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgtcatgtggccttttaccgtgat |
6526915 |
T |
|
| Q |
312 |
tttcatt |
318 |
Q |
| |
|
||||||| |
|
|
| T |
6526916 |
tttcatt |
6526922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 6848196 - 6848502
Alignment:
| Q |
12 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaagatatttcacttacttttataaaggtcttctgaaact |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6848196 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaatatatttcacttacttttataaaggtcttctgaaact |
6848295 |
T |
|
| Q |
112 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgtttacgctgattgtctgtttttcttctt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6848296 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatgttctgactttatgagccatcttttttattctgtttacgctgattgtctgtttttcttctt |
6848395 |
T |
|
| Q |
212 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaatcaattacatggtgaggatgtcatgtggccttttaccgtgac |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6848396 |
gtgtcttcccaggaaacacgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgccatgtggccttttaccgtgat |
6848495 |
T |
|
| Q |
312 |
tttcatt |
318 |
Q |
| |
|
||||||| |
|
|
| T |
6848496 |
tttcatt |
6848502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 6557862 - 6558165
Alignment:
| Q |
12 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaagatatttcacttacttttataaaggtcttctgaaact |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
6557862 |
acattgtgtgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaacatgtttcacttacttttataagtgtcttctgaaact |
6557961 |
T |
|
| Q |
112 |
atgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgtttacgctgattgtctgtttttcttctt |
211 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6557962 |
atgtttcaaagctgtctgcaacaaattgacatacaccataatctgactttatggcccatcttttttattctgtttacgctgattgtctgttt---ttctt |
6558058 |
T |
|
| Q |
212 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaatcaattacatggtgaggatgtcatgtggccttttaccgtgac |
311 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6558059 |
gtgtctttccgggaaacatgagacttgagaaaaaaagccgatgaattacttgcatcaacaaattacatggtgaggatgtcatgtggccttttaccgtgat |
6558158 |
T |
|
| Q |
312 |
tttcatt |
318 |
Q |
| |
|
||||||| |
|
|
| T |
6558159 |
tttcatt |
6558165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 6788665 - 6788962
Alignment:
| Q |
12 |
acattgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaagatatttcacttacttttataaaggtcttctgaaac- |
110 |
Q |
| |
|
||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
6788665 |
acattgtgtgaatttcatccattgcgatttgttcatggtttgtattcaagcattataatgaaacatatttcacttacttttataaagttattctgaaact |
6788764 |
T |
|
| Q |
111 |
---tatgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgttt-acgctgattgtctgtttttc |
206 |
Q |
| |
|
||||||||||| | | |||||||||| ||||||| |||||||| |||||||| ||| | |||| ||||| ||| || || ||||||||||||| |
|
|
| T |
6788765 |
atatatgtttcaaatttgtatgcaacaaatattcatacaacatattctaactttatgtcccaccgttttgattctctttcactctaattgtctgtttttt |
6788864 |
T |
|
| Q |
207 |
ttcttgtgtcttcccaggaaacatgagacttgagaaaagaagccga-tgaattaattgcatcaatcaattacatggtgaggatgtcatgtggcctttt |
303 |
Q |
| |
|
||| || || ||||||| |||||||||||| ||||||||||||| | ||||||| ||| ||||| ||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
6788865 |
ttcgtgagttttcccagcaaacatgagactcgagaaaagaagccaattgaattacttgaatcaaacaattacatagtgaggacgtcatgtagcctttt |
6788962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 6549360 - 6549633
Alignment:
| Q |
14 |
attgtttgaattccatccattccaatttgttcatggtttgtattcaagcattataatgaaagatatttcacttacttttataaaggtctt-ctgaaacta |
112 |
Q |
| |
|
||||| || |||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||| || ||||||||| |
|
|
| T |
6549360 |
attgtgtggattccatctattccaatttgtacatggtttgtattcaagcattataataaaacatatttcatttacatttataaaggttttactgaaacta |
6549459 |
T |
|
| Q |
113 |
tgtttcaaagtgttctgcaacaaattgtcatacaccatattctgactttatgagccatcttttttattctgttt-acgctgattgtctgtttttcttctt |
211 |
Q |
| |
|
||||||||| | | ||||||||||||| |||||| |||||||||| | ||| ||| ||| | | |||||||||||||||| |
|
|
| T |
6549460 |
tgtttcaaatttatttgcaacaaattgt------------------tttatgtcccatctttttgagtctctttaacgttaaatgtctgtttttcttctc |
6549541 |
T |
|
| Q |
212 |
gtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaatcaattacatggtgaggatgtcatgtggcctttt |
303 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| | ||||||| | ||| ||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
6549542 |
atgtcttcccagaaagcatgagacttgagaaaagaaactgatgaatgacttgtatcaaccaattacatggtgagaatgtcatgtgacctttt |
6549633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 6939393 - 6939319
Alignment:
| Q |
231 |
gagacttgagaaaagaagccgatgaattaattgcatcaatcaattacatggtgaggatgtcatgtggccttttac |
305 |
Q |
| |
|
||||| |||||||||||| || || || |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6939393 |
gagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttac |
6939319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 8468044 - 8467998
Alignment:
| Q |
46 |
atggtttgtattcaagcattataatgaaagatatttcacttactttt |
92 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||||| |||||| |
|
|
| T |
8468044 |
atggtttgtattcaagcattataaagaaacatgtttcactaactttt |
8467998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University