View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_29 (Length: 308)
Name: NF18583_low_29
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 6819961 - 6819683
Alignment:
| Q |
19 |
ccttcacgttgctgcagagcttgggaatgtagaaatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaact |
118 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819961 |
ccttcatgttgctgcagagcttgggaatgtagacatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaact |
6819862 |
T |
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| Q |
119 |
cctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819861 |
cctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaaca |
6819762 |
T |
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| Q |
219 |
atggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttctatatgttcat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819761 |
atggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttctatatgttcat |
6819683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 6834436 - 6834180
Alignment:
| Q |
20 |
cttcacgttgctgcagagcttgggaatgtagaaatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactc |
119 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||| ||||| | |||| ||| ||||||||||| ||||||||||| |||||||| |||| |
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| T |
6834436 |
cttcatgttgcagcagagcttgggaatgtagaaatttgcaacaatatagccagaagagatcccatcctcatttcatatcgaaattttgaaggcgagactc |
6834337 |
T |
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| Q |
120 |
ctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaa |
219 |
Q |
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| T |
6834336 |
ctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcacgaacagaacaaagatgatgactcactttcaatcaaaaacaa |
6834237 |
T |
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| Q |
220 |
tggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattg |
276 |
Q |
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| T |
6834236 |
tggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattg |
6834180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 6813404 - 6813127
Alignment:
| Q |
20 |
cttcacgttgctgcagagcttgggaatgtagaaatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaatttcgaaggcgaaactc |
119 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
6813404 |
cttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctcatttcctgtcgaaatttcgaaggcgaaactc |
6813305 |
T |
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| Q |
120 |
ctcttttcttggcagctgttcatggaaaaagagatgctttcttttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaatcaaaaacaa |
219 |
Q |
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||||||||||||||||||| |||| |||||||| || ||||||||||||||| ||| || ||| ||||||||||| | ||| |||||| ||||| || |
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| T |
6813304 |
ctcttttcttggcagctgtatatggcaaaagagaggcattcttttgtcttcatagtcgtcatcaggacaaagatgattattcagtttcaagaaaaaataa |
6813205 |
T |
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| Q |
220 |
tggagacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttctatatgttcat |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6813204 |
tggggacactattcttcattctaccatatccagtgaatactttggttagtgtcattgactaaacttatatatgttcat |
6813127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 34778905 - 34778826
Alignment:
| Q |
162 |
tttgtcttcatggtcaccaacagaacaaagatgatgactcactttcaat--caaaaacaatggagacactattcttcatt |
239 |
Q |
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| T |
34778905 |
tttgtcttcatggtcaccaacagaataaagatgatgattcactttcaataaaaaaaacaatggagacaccattcttcatt |
34778826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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