View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18583_low_3 (Length: 589)
Name: NF18583_low_3
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 13 - 574
Target Start/End: Complemental strand, 11123776 - 11123215
Alignment:
| Q |
13 |
aatatgtcgcaagtacaaaatcgaagttttagcaaaaccacagttggtccgttttgagaaaaaattggtggctcaataaacatctcagaaccgtctcaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11123776 |
aatatgtcgcaagtacaaaatcgaagttttagcaaaaccacagttgacccgttttgagaaaaaattggtggctcaataaacatctcagaaccgtctcaaa |
11123677 |
T |
|
| Q |
113 |
atatgaaacatggtcctctacggattgactatagaccaatatattgtaaataaatagtaaacttcctcaaatatatcataagcattcaatagtggcatga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11123676 |
atatgaaacatggtcctctacggattgactatagaccaatatattgtaaataaatagtaaacttcctcaaatatgtcataagcattcaatagtggcatga |
11123577 |
T |
|
| Q |
213 |
aaagtagatggggcattacatgtaccaaatgtcatgtttatcacttcgagggcagtactttcataaaagaaagaagcaattgaacaattcagactgttgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11123576 |
aaagtagatggggcattacatgtaccaaatgttatgtttatcacttcgagggcagtactttcataaaagaaagaagcaattgaacagttcagactgttgg |
11123477 |
T |
|
| Q |
313 |
tatttcttggcttccatcataagagacaacttctctacatagccaaatatcattacaacctatatagccatgctttctttgaaatttttgaagttgagtc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11123476 |
tatttcttggcttccatcataagagacaatttctctacatagccaaatatcattacaacctgtatagctatgctttctttgaaatttttgaagttgagtc |
11123377 |
T |
|
| Q |
413 |
tatatgaaaacctagcatttgtatttcaaatattacacatactacttgcccatgtgaaagaaaataaattataaaacaagacttgttaagagtgtagact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11123376 |
tatatgaaaacctagcatttgtatttcaaatattacacatactacttgtccatgtgaaggaaaataaattataaaacaagacttgttaagagcgtagact |
11123277 |
T |
|
| Q |
513 |
atattacacttggcatttgttaatacatatgcactgcacattcgtcctttgactcacataac |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11123276 |
atattacacttggcatttgttaatacatatgcactgcacattcgtcctttgactcacataac |
11123215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 7023104 - 7022988
Alignment:
| Q |
43 |
agcaaaaccacagttggtccgttttgagaaaaaattggtggctcaataaacatctcagaaccgtctcaaaat-atgaaacatggtcctctacggattgac |
141 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||| |||| || ||| || ||||| ||||||| |
|
|
| T |
7023104 |
agcaaaaccacatttggtctgttttgagataaaattagtggttcaataaacatctcaaaaccgtctctaaatgataaaaaat----ctctagagattgac |
7023009 |
T |
|
| Q |
142 |
tatagaccaatatattgtaaa |
162 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7023008 |
tatagaccaatatattgtaaa |
7022988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 566
Target Start/End: Complemental strand, 7022909 - 7022790
Alignment:
| Q |
437 |
ttcaaatattacacatactacttgcccatgtgaaagaaaataaattataaaacaagacttgttaagagtgtagactatattacacttggcatttgttaat |
536 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
7022909 |
ttcaaatattacatatactgcttgcctgtgtgaaggaaaataaattataaatcaagttctgtta----------ctatattacacttggcatttgttaat |
7022820 |
T |
|
| Q |
537 |
acatatgcactgcacattcgtcctttgact |
566 |
Q |
| |
|
|| ||||||| | |||||||||| |||| |
|
|
| T |
7022819 |
acgcatgcactatagattcgtccttggact |
7022790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University