View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18583_low_31 (Length: 296)

Name: NF18583_low_31
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18583_low_31
NF18583_low_31
[»] chr1 (1 HSPs)
chr1 (1-278)||(38130849-38131129)
[»] chr2 (9 HSPs)
chr2 (24-82)||(33833714-33833772)
chr2 (203-275)||(35251073-35251145)
chr2 (49-92)||(12885543-12885586)
chr2 (231-278)||(45293811-45293858)
chr2 (112-150)||(32069313-32069351)
chr2 (112-150)||(37773880-37773918)
chr2 (24-93)||(3958021-3958090)
chr2 (36-93)||(17155141-17155198)
chr2 (1-93)||(19110132-19110223)
[»] chr5 (7 HSPs)
chr5 (24-93)||(25968235-25968304)
chr5 (112-150)||(9439531-9439569)
chr5 (26-79)||(26598405-26598458)
chr5 (27-93)||(5535577-5535642)
chr5 (51-92)||(18514757-18514798)
chr5 (26-62)||(4955779-4955815)
chr5 (45-93)||(14649890-14649938)
[»] chr4 (13 HSPs)
chr4 (26-81)||(346298-346353)
chr4 (26-93)||(29515483-29515550)
chr4 (43-88)||(20518272-20518315)
chr4 (50-87)||(48629747-48629784)
chr4 (51-92)||(55433842-55433883)
chr4 (113-153)||(42497950-42497990)
chr4 (26-93)||(53836340-53836407)
chr4 (112-146)||(30030294-30030328)
chr4 (112-146)||(30046563-30046597)
chr4 (211-275)||(1788153-1788217)
chr4 (49-93)||(3569375-3569418)
chr4 (21-65)||(18171107-18171151)
chr4 (203-275)||(20517757-20517829)
[»] chr8 (5 HSPs)
chr8 (27-92)||(35677291-35677356)
chr8 (1-85)||(28219145-28219229)
chr8 (43-93)||(36317766-36317816)
chr8 (114-155)||(35677238-35677279)
chr8 (26-82)||(10840889-10840945)
[»] chr6 (2 HSPs)
chr6 (25-93)||(29631036-29631102)
chr6 (113-155)||(10310473-10310515)
[»] chr7 (2 HSPs)
chr7 (30-93)||(48706121-48706184)
chr7 (24-93)||(25613235-25613305)
[»] chr3 (3 HSPs)
chr3 (24-79)||(4508853-4508908)
chr3 (26-86)||(27143543-27143603)
chr3 (203-275)||(47769405-47769477)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 38130849 - 38131129
Alignment:
Q  1 agtttttcttttgtattggggtgggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttgnnnnnnn 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  38130849 agtttttcttttgtattggg-tggaaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttgttttttt 38130947  T
Q  101 nnnnnnnnnn---ccggattatagaattcgaacaccccttaaacacccttatttagggnnnnnnn-tagctcggattatataattcaaactctatcaaat 196  Q
                 ||||||||||||||||||||| ||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  38130948 ttttttcttctttccggattatagaattcgaacatcccctaaacacccttatttagggaaaaaaaatagctcggattatataattcaaactctatcaaat 38131047  T
Q  197 caaatttttgtaatatgaatagtcagttcaatgatcatattagccttcttaactctcatctttctattttaggtcattgcta 278  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38131048 caaatttttgtaatatgaatagtcaattcaaggatcatattaaccttcttaactctcatctttctattttaggtcattgcta 38131129  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 33833714 - 33833772
Alignment:
Q  24 ggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaataggg 82  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||||    
T  33833714 ggaaaaatgagtttttcaccaatttggattttataatccgaacaccccaaaaaataggg 33833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 35251073 - 35251145
Alignment:
Q  203 tttgtaatatgaatagtcagttcaatgatcatattagccttcttaactctcatctttctattttaggtcattg 275  Q
    ||||||||||| |||| ||||| || || |||||||  |||||||||||  ||| ||||||||||||||||||    
T  35251073 tttgtaatatggatagccagtttaaggaccatattaatcttcttaactcctatccttctattttaggtcattg 35251145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 12885586 - 12885543
Alignment:
Q  49 ggattttataatccgaacaccctaaaaaatagggtgtgttcctt 92  Q
    |||||||||||||||||||||| ||||||||||| | |||||||    
T  12885586 ggattttataatccgaacacccaaaaaaatagggcgcgttcctt 12885543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 45293811 - 45293858
Alignment:
Q  231 tcatattagccttcttaactctcatctttctattttaggtcattgcta 278  Q
    ||||||||  |||| |||||||||||||||| ||||||||||||||||    
T  45293811 tcatattaatcttcctaactctcatctttctgttttaggtcattgcta 45293858  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 32069351 - 32069313
Alignment:
Q  112 cggattatagaattcgaacaccccttaaacacccttatt 150  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  32069351 cggattatagaattcaaacaccccctaaacacccttatt 32069313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 37773918 - 37773880
Alignment:
Q  112 cggattatagaattcgaacaccccttaaacacccttatt 150  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  37773918 cggattatagaatctgaacaccccttaaacacccttatt 37773880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 3958090 - 3958021
Alignment:
Q  24 ggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||||||||| ||| || |||||   |||||||||| ||||||||| ||||| ||||| ||||||||||    
T  3958090 ggaaaaatgagtttttcaccaattaaaattttataattcgaacaccccaaaaagtagggcgtgttccttg 3958021  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 17155141 - 17155198
Alignment:
Q  36 tttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    |||||| |||||  |||||||||||||| ||||| ||||||| |||| ||||||||||    
T  17155141 tttacaccaattcagattttataatccggacaccttaaaaaacagggcgtgttccttg 17155198  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19110223 - 19110132
Alignment:
Q  1 agtttttcttttgtattggggtgggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    |||||||| |||||  |||||||  ||||||||  ||| || |||||||||||||||||||| || | |  ||||||||||| ||||||||||    
T  19110223 agtttttcctttgtcatggggtgaaaaaaatgattttt-caccaatttggattttataatccaaaaatctgaaaaaatagggcgtgttccttg 19110132  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 25968235 - 25968304
Alignment:
Q  24 ggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||||||||| ||| || ||||| ||||||||||||||||| |||| |||||||||| |||||||||||    
T  25968235 ggaaaaatgagtttttcaccaattcggattttataatccgaataccccaaaaaataggatgtgttccttg 25968304  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 9439569 - 9439531
Alignment:
Q  112 cggattatagaattcgaacaccccttaaacacccttatt 150  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9439569 cggattatagaattcgaacaccccttaaacatccttatt 9439531  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 26598405 - 26598458
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaata 79  Q
    ||||||||| ||| |||||||||| |||||||||||| ||||||| ||||||||    
T  26598405 aaaaatgagtttttcatcaatttgaattttataatccaaacaccccaaaaaata 26598458  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 5535642 - 5535577
Alignment:
Q  27 aaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    |||||||| ||| || |||||| |||||||||||||||||||  ||||||| |||| ||||||||||    
T  5535642 aaaatgagtttttcaccaatttagattttataatccgaacacaataaaaaa-agggcgtgttccttg 5535577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 18514757 - 18514798
Alignment:
Q  51 attttataatccgaacaccctaaaaaatagggtgtgttcctt 92  Q
    ||||| |||||||||||||| ||||||||||||| |||||||    
T  18514757 attttgtaatccgaacaccccaaaaaatagggtgcgttcctt 18514798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 4955815 - 4955779
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatcc 62  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  4955815 aaaaaagagattttcatcaatttggattttataatcc 4955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 14649890 - 14649938
Alignment:
Q  45 atttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||||||||||||| || ||||||| |||||||| |||||||| ||||    
T  14649890 atttggattttataacccaaacaccccaaaaaatatggtgtgttacttg 14649938  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 346353 - 346298
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagg 81  Q
    |||| |||| ||| || |||||||||||||||||||||||||||||||||||||||    
T  346353 aaaattgagtttttcaccaatttggattttataatccgaacaccctaaaaaatagg 346298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 29515550 - 29515483
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||||||| ||| || |||||| |||||||||||||||| |||  ||||||||||||||||||||||    
T  29515550 aaaaatgagtttttcaccaatttagattttataatccgaaaacctcaaaaaatagggtgtgttccttg 29515483  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 20518315 - 20518272
Alignment:
Q  43 caatttggattttataatccgaacaccctaaaaaatagggtgtgtt 88  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  20518315 caatttggattttataatccgaaca--ctaaaaaatagggtgtgtt 20518272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 48629784 - 48629747
Alignment:
Q  50 gattttataatccgaacaccctaaaaaatagggtgtgt 87  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  48629784 gattttataatccgaacacccaaaaaaatagggtgtgt 48629747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 55433883 - 55433842
Alignment:
Q  51 attttataatccgaacaccctaaaaaatagggtgtgttcctt 92  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  55433883 attttataattcgaacaccctaaaaaatatggtgtgttcctt 55433842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 42497990 - 42497950
Alignment:
Q  113 ggattatagaattcgaacaccccttaaacacccttatttag 153  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  42497990 ggattatagaatccgaacaccccctaaacacccttatttag 42497950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 53836407 - 53836340
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||| ||| ||| |||||||| | ||||||||||| |||||||| ||||||||||  ||||||||||    
T  53836407 aaaaaggagtttttcatcaattcgaattttataatctgaacaccccaaaaaataggacgtgttccttg 53836340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 30030328 - 30030294
Alignment:
Q  112 cggattatagaattcgaacaccccttaaacaccct 146  Q
    ||||||||| |||||||||||||||||||||||||    
T  30030328 cggattataaaattcgaacaccccttaaacaccct 30030294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 30046597 - 30046563
Alignment:
Q  112 cggattatagaattcgaacaccccttaaacaccct 146  Q
    ||||||||| |||||||||||||||||||||||||    
T  30046597 cggattataaaattcgaacaccccttaaacaccct 30046563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 1788153 - 1788217
Alignment:
Q  211 atgaatagtcagttcaatgatcatattagccttcttaactctcatctttctattttaggtcattg 275  Q
    |||||||  ||||| |||||||||||||  |||| ||||||||||  |||| |||||||||||||    
T  1788153 atgaataaccagtttaatgatcatattaatcttcataactctcattcttctgttttaggtcattg 1788217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 3569375 - 3569418
Alignment:
Q  49 ggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||    
T  3569375 ggattttataatctgaacaccccaaaaaa-agggtgtgttccttg 3569418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 18171107 - 18171151
Alignment:
Q  21 gtgggaaaaatgagatttacatcaatttggattttataatccgaa 65  Q
    |||||||||||||| ||| ||| |||||||||| |||||||||||    
T  18171107 gtgggaaaaatgagtttttcataaatttggattctataatccgaa 18171151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 20517829 - 20517757
Alignment:
Q  203 tttgtaatatgaatagtcagttcaatgatcatattagccttcttaactctcatctttctattttaggtcattg 275  Q
    ||||||| ||| ||| ||| || |||||||||||||  ||| ||||||||||| |||||  ||||||||||||    
T  20517829 tttgtaacatggataatcaatttaatgatcatattaaactttttaactctcatatttctgatttaggtcattg 20517757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 35677356 - 35677291
Alignment:
Q  27 aaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttcctt 92  Q
    |||||||| ||| || |||||  ||||||||||||||||||||| ||||||||||||| |||||||    
T  35677356 aaaatgagtttttcaccaattcagattttataatccgaacaccccaaaaaatagggtgcgttcctt 35677291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28219229 - 28219145
Alignment:
Q  1 agtttttcttttgtattggggtgggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgt 85  Q
    |||||||| |||||  |||||||  ||||||||| ||| || ||||||||||||||||||||||| |||  ||||||||| ||||    
T  28219229 agtttttcctttgttatggggtgaaaaaaatgagtttttcaacaatttggattttataatccgaaaacctcaaaaaatagtgtgt 28219145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 36317766 - 36317816
Alignment:
Q  43 caatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||| ||||||||||||||||| ||| |||||||||||| ||||||||||    
T  36317766 caattcggattttataatccgaaaaccgtaaaaaatagggcgtgttccttg 36317816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 35677279 - 35677238
Alignment:
Q  114 gattatagaattcgaacaccccttaaacacccttatttaggg 155  Q
    ||||||| |||||||||||||| |||||||||||||| ||||    
T  35677279 gattataaaattcgaacaccccataaacacccttattcaggg 35677238  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 10840945 - 10840889
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaataggg 82  Q
    ||||||||| ||| || ||||| ||||||||||||||||| |||  |||||||||||    
T  10840945 aaaaatgaggtttccaccaattcggattttataatccgaaaacctcaaaaaataggg 10840889  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 29631102 - 29631036
Alignment:
Q  25 gaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    |||||||||| ||| ||||| || |||||||||||||||||||||  |||||||||||||| |||||||    
T  29631102 gaaaaatgagtttttcatcatttcggattttataatccgaacacc--aaaaaatagggtgttttccttg 29631036  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 10310515 - 10310473
Alignment:
Q  113 ggattatagaattcgaacaccccttaaacacccttatttaggg 155  Q
    |||||||||||| |||||||||| |||||||||||||| ||||    
T  10310515 ggattatagaatccgaacaccccctaaacacccttattcaggg 10310473  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 48706184 - 48706121
Alignment:
Q  30 atgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtgttccttg 93  Q
    ||||| ||| || |||||||||||||||||||||||||||| ||||| ||||| | ||||||||    
T  48706184 atgagtttttcaccaatttggattttataatccgaacaccccaaaaattagggcgcgttccttg 48706121  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 25613305 - 25613235
Alignment:
Q  24 ggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaat-agggtgtgttccttg 93  Q
    ||||||||||  ||| ||||||||  |||||||||| |||||||||| ||||||  |||||||||||||||    
T  25613305 ggaaaaatgaatttttcatcaattcagattttataaaccgaacacccaaaaaaaacagggtgtgttccttg 25613235  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 4508853 - 4508908
Alignment:
Q  24 ggaaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaata 79  Q
    ||||||||||| ||| || ||||| ||||||| |||||| ||||||||||||||||    
T  4508853 ggaaaaatgagtttttcaccaattcggattttgtaatccaaacaccctaaaaaata 4508908  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 27143603 - 27143543
Alignment:
Q  26 aaaaatgagatttacatcaatttggattttataatccgaacaccctaaaaaatagggtgtg 86  Q
    ||||||||||||| || |||||| |||||||||||||||| |||  || ||||| ||||||    
T  27143603 aaaaatgagattttcaccaatttagattttataatccgaaaacctaaacaaataaggtgtg 27143543  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 47769405 - 47769477
Alignment:
Q  203 tttgtaatatgaatagtcagttcaatgatcatattagccttcttaactctcatctttctattttaggtcattg 275  Q
    ||||||| ||| ||||||| || ||  |||||||||  ||| |||||| ||||| ||||||||||||||||||    
T  47769405 tttgtaacatggatagtcattttaagaatcatattaatctttttaactatcatcattctattttaggtcattg 47769477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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