View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18583_low_32 (Length: 291)

Name: NF18583_low_32
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18583_low_32
NF18583_low_32
[»] chr6 (67 HSPs)
chr6 (12-274)||(25579744-25580006)
chr6 (8-274)||(26055947-26056213)
chr6 (8-274)||(26075917-26076183)
chr6 (12-274)||(26142890-26143152)
chr6 (12-274)||(25538565-25538827)
chr6 (21-227)||(26048879-26049085)
chr6 (21-227)||(26070048-26070254)
chr6 (12-274)||(25481767-25482029)
chr6 (12-256)||(26656014-26656258)
chr6 (12-256)||(26761985-26762229)
chr6 (12-259)||(27337980-27338227)
chr6 (12-259)||(27398720-27398967)
chr6 (12-274)||(26646504-26646766)
chr6 (12-274)||(26752472-26752734)
chr6 (29-175)||(27427605-27427751)
chr6 (13-259)||(26823866-26824112)
chr6 (12-129)||(26884188-26884307)
chr6 (59-204)||(26623048-26623193)
chr6 (59-204)||(26729026-26729171)
chr6 (12-259)||(27718294-27718541)
chr6 (12-175)||(27678971-27679134)
chr6 (12-129)||(27698539-27698656)
chr6 (12-259)||(27610917-27611164)
chr6 (12-175)||(27677613-27677776)
chr6 (12-207)||(27724812-27725007)
chr6 (12-163)||(28149963-28150113)
chr6 (12-129)||(27706447-27706564)
chr6 (8-127)||(28181135-28181254)
chr6 (12-102)||(27229257-27229347)
chr6 (12-205)||(28242829-28243022)
chr6 (71-261)||(26949745-26949935)
chr6 (8-127)||(28185387-28185506)
chr6 (26-124)||(27531247-27531345)
chr6 (12-129)||(27593065-27593182)
chr6 (21-207)||(26341898-26342087)
chr6 (26-189)||(28139580-28139743)
chr6 (8-127)||(28226971-28227090)
chr6 (12-119)||(31284313-31284420)
chr6 (21-177)||(27604702-27604858)
chr6 (68-246)||(28098297-28098475)
chr6 (68-274)||(26848741-26848947)
chr6 (66-127)||(28297760-28297821)
chr6 (66-127)||(28514252-28514313)
chr6 (68-116)||(2184369-2184417)
chr6 (13-121)||(26861642-26861750)
chr6 (69-117)||(26975134-26975182)
chr6 (12-115)||(28234589-28234692)
chr6 (69-119)||(25071741-25071791)
chr6 (67-129)||(26937174-26937236)
chr6 (12-129)||(26802467-26802584)
chr6 (21-122)||(28325515-28325616)
chr6 (69-116)||(2184980-2185027)
chr6 (68-127)||(27214498-27214557)
chr6 (68-127)||(27234671-27234730)
chr6 (12-129)||(28781164-28781281)
chr6 (197-259)||(25506899-25506961)
chr6 (68-122)||(27665169-27665223)
chr6 (216-261)||(25071888-25071933)
chr6 (216-261)||(27214649-27214694)
chr6 (216-261)||(27234534-27234579)
chr6 (71-122)||(26635774-26635825)
chr6 (71-122)||(26741740-26741791)
chr6 (71-117)||(26959250-26959296)
chr6 (197-258)||(24715795-24715856)
chr6 (12-129)||(28786303-28786420)
chr6 (12-129)||(28792424-28792541)
chr6 (153-205)||(29826193-29826245)
[»] chr4 (8 HSPs)
chr4 (12-274)||(18731391-18731653)
chr4 (12-274)||(18699287-18699549)
chr4 (12-274)||(18679454-18679716)
chr4 (12-274)||(18723972-18724234)
chr4 (12-274)||(18655364-18655626)
chr4 (29-175)||(18073804-18073950)
chr4 (29-126)||(17989088-17989185)
chr4 (69-207)||(5090921-5091059)
[»] chr1 (3 HSPs)
chr1 (12-274)||(268244-268506)
chr1 (23-262)||(28127578-28127817)
chr1 (67-262)||(28164262-28164456)
[»] chr8 (1 HSPs)
chr8 (67-258)||(29273686-29273877)
[»] scaffold0003 (1 HSPs)
scaffold0003 (29-175)||(59612-59758)
[»] scaffold0349 (2 HSPs)
scaffold0349 (12-129)||(3466-3584)
scaffold0349 (12-207)||(14323-14517)
[»] scaffold0038 (4 HSPs)
scaffold0038 (12-205)||(42991-43184)
scaffold0038 (8-127)||(27469-27588)
scaffold0038 (12-127)||(34750-34865)
scaffold0038 (21-122)||(116830-116931)
[»] scaffold0019 (1 HSPs)
scaffold0019 (12-122)||(58334-58444)
[»] scaffold0277 (2 HSPs)
scaffold0277 (70-259)||(4586-4775)
scaffold0277 (12-129)||(13677-13794)
[»] chr2 (4 HSPs)
chr2 (21-122)||(3279722-3279823)
chr2 (69-122)||(17993736-17993789)
chr2 (182-261)||(17993597-17993676)
chr2 (153-204)||(3279857-3279908)
[»] scaffold0419 (1 HSPs)
scaffold0419 (12-129)||(7550-7667)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 67)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 25579744 - 25580006
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  ||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579744 catcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 25579843  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25579844 cattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagtat 25579943  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  25579944 cttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatgg 25580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 26055947 - 26056213
Alignment:
Q  8 acatcatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 107  Q
    |||||||||||  |||||||||| ||||||||   ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26055947 acatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 26056046  T
Q  108 acatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 207  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056047 acatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 26056146  T
Q  208 gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26056147 gcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatgg 26056213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 26075917 - 26076183
Alignment:
Q  8 acatcatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 107  Q
    |||||||||||  |||||||||| ||||||||   ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26075917 acatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 26076016  T
Q  108 acatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 207  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26076017 acatcattcactgctacaacacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 26076116  T
Q  208 gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26076117 gcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatgg 26076183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 26142890 - 26143152
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  ||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26142890 catcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 26142989  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  26142990 cattcactgctacaagacaaagagttgcttagtatttcccgttttctatgatgtggaacctactcacatacgaaatcagagtgggatttatggtgagcat 26143089  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  26143090 cttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatgg 26143152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 25538565 - 25538827
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||| |||||||| |  || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25538565 catcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccagat 25538664  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  25538665 cattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaacctactcagttacgacatcagagtgggagttatggtgagcat 25538764  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
     ||||||||||||||||| |||| ||||||||  ||||||||||||||||| |||||||||||    
T  25538765 tttactaagcatgaagagaggtttcaaaataatgagaaaaacatggagcgattgcgtcaatgg 25538827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 26048879 - 26049085
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    |||||||||| |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26048879 tcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 26048978  T
Q  121 ctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaag 220  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  26048979 ctacaagacaaagagttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaag 26049078  T
Q  221 catgaag 227  Q
    |||||||    
T  26049079 catgaag 26049085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 26070048 - 26070254
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    |||||||||| |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26070048 tcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 26070147  T
Q  121 ctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaag 220  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  26070148 ctacaagacaaagagttgcttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaag 26070247  T
Q  221 catgaag 227  Q
    |||||||    
T  26070248 catgaag 26070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 25481767 - 25482029
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  ||||||||||||||||||| | ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25481767 catcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 25481866  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||| |||||| |  | |||| ||| |   | |||||||||||  ||    
T  25481867 cattcactgctacaagacaaagagttgcttagtattacccgttttctatggtgtggatcctactgatgttcgacgtcatacatgtagttatggtgaatat 25481966  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  25481967 ctgactaagcatgaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatgg 25482029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 26656014 - 26656258
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| | ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26656014 catcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 26656113  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||| ||||| ||||| | | |||| |  || ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||    
T  26656114 cattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcat 26656213  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatg 256  Q
    ||||||||||||||| ||  |||||||||||||||| ||||||||    
T  26656214 cttactaagcatgaaaagaagttccaaaataacaaggaaaacatg 26656258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 26761985 - 26762229
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| | ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26761985 catcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 26762084  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||| ||||| ||||| | | |||| |  || ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||    
T  26762085 cattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcat 26762184  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatg 256  Q
    ||||||||||||||| ||  |||||||||||||||| ||||||||    
T  26762185 cttactaagcatgaaaagaagttccaaaataacaaggaaaacatg 26762229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 27338227 - 27337980
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27338227 catcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacat 27338128  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | | |||| |  || ||||| |||||||||| || ||| ||||||||| |||||||||||| |||||||||||||||||||    
T  27338127 cattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcat 27338028  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    |||||||||||||||||   |||||||||||||||| |||||||||||    
T  27338027 cttactaagcatgaagataagttccaaaataacaaggaaaacatggag 27337980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 27398967 - 27398720
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  27398967 catcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacat 27398868  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | | |||| |  || ||||| |||||||||| || ||| ||||||||| |||||||||||| |||||||||||||||||||    
T  27398867 cattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcat 27398768  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    |||||||||||||||||   |||||||||||||||| |||||||||||    
T  27398767 cttactaagcatgaagataagttccaaaataacaaggaaaacatggag 27398720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 26646504 - 26646766
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||||||||||||||||||||||| | ||| || |||||  | ||||||  ||||||||| ||||||  |||||||||||||||||||||||||||    
T  26646504 catcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacat 26646603  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||| ||||||||||| | | || |  | || ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||| |||    
T  26646604 cattcattgctacaagacaaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacat 26646703  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || |||||||| |||||| | |||||||||||||||||||||| ||| ||| ||| |||||||    
T  26646704 ctcactaagcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatgg 26646766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 26752472 - 26752734
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||||||||||||||||||||||| | ||| || |||||  | ||||||  ||||||||| ||||||  |||||||||||||||||||||||||||    
T  26752472 catcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacat 26752571  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||| ||||||||||| | | || |  | || ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||| |||    
T  26752572 cattcattgctacaagacaaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacat 26752671  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || |||||||| |||||| | |||||||||||||||||||||| ||| ||| ||| |||||||    
T  26752672 ctcactaagcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatgg 26752734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 27427751 - 27427605
Alignment:
Q  29 attgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaaga 128  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| |    
T  27427751 attgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaa 27427652  T
Q  129 cgacgagttgcttagtattgcccgttttctatgatgtggaacctact 175  Q
    | | | ||||| | || ||||| ||||||| || |||||||||||||    
T  27427651 ccaagggttgcctcgttttgcctgttttctttggtgtggaacctact 27427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 26823866 - 26824112
Alignment:
Q  13 atcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatc 112  Q
    ||||||||  || ||||||||||| || | ||| || |||||  | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26823866 atcactcaataatgccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatc 26823965  T
Q  113 attcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatc 212  Q
    |||| |  |||||||   | | |  || | || ||||| |||||||||| |||||| |||  | |||||||||||||| |||||||||||| |   ||||    
T  26823966 attcgcgtctacaaggaaaaggggcgcctcgttttgcctgttttctatggtgtggatcctggtgacatacgacatcagcgtgggagttatgctatacatc 26824065  T
Q  213 ttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    | |||||||||||| || |||||  |||||||||| |||||||||||    
T  26824066 tcactaagcatgaaaagaggttcggaaataacaaggaaaacatggag 26824112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 26884188 - 26884307
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccaca- 110  Q
    |||||||||||||||||||||||||||| |  || || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  26884188 catcactcatcaaggccattgaagaatctagaatttttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaacttgtccacat 26884287  T
Q  111 -tcattcactgctacaagac 129  Q
     |||||||||||||| ||||    
T  26884288 gtcattcactgctacgagac 26884307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 26623048 - 26623193
Alignment:
Q  59 ttttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttct 158  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || | | || |  | || |||||||| ||||    
T  26623048 ttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttct 26623147  T
Q  159 atgatgtggaacctactcacatacgacatcagagtgggagttatgg 204  Q
    |||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26623148 atggcgtggatcctactcacatacggcatcaaactgggagttatgg 26623193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 26729026 - 26729171
Alignment:
Q  59 ttttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttct 158  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || | | || |  | || |||||||| ||||    
T  26729026 ttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttct 26729125  T
Q  159 atgatgtggaacctactcacatacgacatcagagtgggagttatgg 204  Q
    |||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26729126 atggcgtggatcctactcacatacggcatcaaactgggagttatgg 26729171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 27718541 - 27718294
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||||||||||    
T  27718541 catcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacat 27718442  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg-agca 210  Q
     ||||||||||||||||| | | || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || |||||||||| ||||    
T  27718441 aattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagca 27718342  T
Q  211 tcttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    | |  || |||||||| || |||| |||||| | ||||| |||||||||    
T  27718341 t-tggctgagcatgaaaagaggtttcaaaatgataagaataacatggag 27718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 27678971 - 27679134
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| || |||||  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  27678971 catcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacat 27679070  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctact 175  Q
    |||||||||||||||||| | | || || | ||  |||| ||||||| || |||||||||||||    
T  27679071 cattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttggtgtggaacctact 27679134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 27698656 - 27698539
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| ||||||||||||| ||||| | ||| || |||||  | ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27698656 catcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttgtttggacgaacttgtccacat 27698557  T
Q  112 cattcactgctacaagac 129  Q
     |||||||||||| ||||    
T  27698556 aattcactgctacgagac 27698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 27611164 - 27610917
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||||||||||    
T  27611164 catcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacat 27611065  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtg-agca 210  Q
     ||||||||||||||||| | | || || | || ||||| |||||||  |  |||||||||||| |  | ||||||||||  || |||||||||| ||||    
T  27611064 aattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagca 27610965  T
Q  211 tcttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    | |  || |||||||| || |||| |||||| | ||||| |||||||||    
T  27610964 t-tggctgagcatgaaaagaggtttcaaaatgataagaataacatggag 27610917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 27677776 - 27677613
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| || ||| |  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  27677776 catcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacat 27677677  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctact 175  Q
    |||||||||||||||||| | | || || | ||  |||| ||||||| || |||||||||||||    
T  27677676 cattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttgctgtggaacctact 27677613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 27725007 - 27724812
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| | |||||| ||||||||||||||||||||||||||    
T  27725007 catcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttgtttggacgaacttgtccacat 27724908  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 207  Q
     ||||||||||||||||| | | || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || |||||||||||    
T  27724907 aattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtga 27724812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 28149963 - 28150113
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| |||||||||||||||| |||| ||| |||||||| || || |||  ||||||| | |||||||||||||||||||||||||||||||||||    
T  28149963 catcactc-tcaaggccattgaagagtccaggattttcattccaatcttctctatcaactatacttcttcttcattttgtttggacgaacttgtccacat 28150061  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgat 163  Q
     |||||||||| |||| | | | ||||||||||  ||||  |||||||||||    
T  28150062 tattcactgcttcaaggcaaagggttgcttagttctgcctattttctatgat 28150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 27706564 - 27706447
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| || |||||  | ||||||  || |||||| |||||||||||||||||||||||||||||||||||    
T  27706564 catcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacgaacttgtccacat 27706465  T
Q  112 cattcactgctacaagac 129  Q
    ||||||||||||||||||    
T  27706464 cattcactgctacaagac 27706447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 28181135 - 28181254
Alignment:
Q  8 acatcatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 107  Q
    |||||||||||  |||||||||||||||| || | ||| ||||||||| | || |||  ||| ||||| |||||||||||||| ||||||||||||||||    
T  28181135 acatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtcc 28181234  T
Q  108 acatcattcactgctacaag 127  Q
    ||||||||||||||| ||||    
T  28181235 acatcattcactgcttcaag 28181254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 27229257 - 27229347
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 102  Q
    |||||||| ||||||||||||| |||||   ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27229257 catcactcgtcaaggccattgacgaatctcggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgaacgaact 27229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 28242829 - 28243022
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  28242829 catcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacat 28242928  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 205  Q
    ||||||||||| |||||  |   |  || |||| |||||  |||||||||||||||||||| || || |  ||||||||| ||| |||||||||    
T  28242929 cattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaaccttctaacgtgagacatcagattggcagttatggt 28243022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 26949745 - 26949935
Alignment:
Q  71 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaac 170  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||| || ||||   |   || || | ||  |||| |||||||||||||| ||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttctatgatgtagaac 26949844  T
Q  171 ctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 261  Q
    || ||||| | |||||||||| |   ||||||||||| ||| ||| |||||||||||||| |||||||||| | ||| ||||||||||||||    
T  26949845 cttctcacgtgcgacatcagaattatagttatggtgaagca-cttgctaagcatgaagagaggttccaaaagagcaaaaaaaacatggagcg 26949935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 28185387 - 28185506
Alignment:
Q  8 acatcatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 107  Q
    |||||||||||  |||||||||||||||| || | ||| ||||||||| | || |||  ||| ||||| |||||||||||||| ||||||||||||||||    
T  28185387 acatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtcc 28185486  T
Q  108 acatcattcactgctacaag 127  Q
    |||||||| |||||| ||||    
T  28185487 acatcattaactgcttcaag 28185506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 27531345 - 27531247
Alignment:
Q  26 gccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac 124  Q
    ||||||||| |||| | ||| || |||||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  27531345 gccattgaaaaatctaggatttttattcccgtattttctgaaaactatgcatcttcttcattttgtttggacgaacttgttcacatcactcattgctac 27531247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 27593182 - 27593065
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| || |||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| ||||||    
T  27593182 catcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacat 27593083  T
Q  112 cattcactgctacaagac 129  Q
    |||||| |||||||||||    
T  27593082 cattcattgctacaagac 27593065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 26342087 - 26341898
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    |||| ||||||||||| |||| ||| |||||||| || || ||   ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||    
T  26342087 tcaaagccattgaagagtccaggattttcattccaattttctcaatcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcattg 26341988  T
Q  121 ctacaag---acgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 207  Q
    || ||||   | || | || ||  | | ||||| |||||||||||  |||||||| ||||  |||||| ||||| ||||||||| |||||    
T  26341987 cttcaaggcaaagaagggtcgcaaaattttgcctgttttctatgacatggaaccttctcatgtacgacgtcagattgggagttacggtga 26341898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 28139580 - 28139743
Alignment:
Q  26 gccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctaca 125  Q
    |||||||||||||| | ||| ||||| ||  | |||||   ||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||| ||    
T  28139580 gccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttcttcgttttgcttggacgaacttgtccacatcattgactgcttca 28139679  T
Q  126 agacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatca 189  Q
    | || | | | || || || ||||| |||||||||| |||||| ||| ||||||| ||||||||    
T  28139680 acacaaagggatgtttggttttgcctgttttctatggtgtggatccttctcacattcgacatca 28139743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 28226971 - 28227090
Alignment:
Q  8 acatcatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 107  Q
    |||||||||||  |||||| |||||||||||| | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||    
T  28226971 acatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtcc 28227070  T
Q  108 acatcattcactgctacaag 127  Q
    |||||||||| |||| ||||    
T  28227071 acatcattcattgcttcaag 28227090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 31284313 - 31284420
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| ||||||||||| || | ||| || || ||| | ||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  31284313 catcactcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaactatgcctcttcgtcgttttgtttggacgaacttgtccacat 31284412  T
Q  112 cattcact 119  Q
    ||||||||    
T  31284413 cattcact 31284420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 27604858 - 27604702
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    ||||||||||||| ||||||| ||| || |||||  | ||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||    
T  27604858 tcaaggccattgatgaatccaggatttttattcctgtgttttctatcaaatatgcctcttcttccttttgtttggatgaacttgttcacatcattcattg 27604759  T
Q  121 ctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactca 177  Q
    ||||| ||| | | || || | || ||||| ||||||| || |||||||||| ||||    
T  27604758 ctacacgacaaagggtcgcgtcgttttgcctgttttctttggtgtggaaccttctca 27604702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 28098475 - 28098297
Alignment:
Q  68 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac-aagacgacgagttgcttagtattgcccgttttctatgatgtg 166  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||||||| | ||| ||||  | | ||||||| || || ||  |||| | ||| |||    
T  28098475 aactatgcttcttctttgttttgtttggatgaacttgtccacatcattcaccgttacgaagaaaagg-gttgcttcgtttttcctattttttgtgacgtg 28098377  T
Q  167 gaacctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaa 246  Q
    |||||| ||||| | ||||||||||  |||||||||||||| |||| |  |||||||||||||| ||||||||||||||||    
T  28098376 gaaccttctcacgtgcgacatcagacggggagttatggtgaagcat-tagctaagcatgaagagaggttccaaaataacaa 28098297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 274
Target Start/End: Original strand, 26848741 - 26848947
Alignment:
Q  68 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtgg 167  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||| |||| ||||   | | || || | ||  | || ||||||||||   | |    
T  26848741 aactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaaggaaaagggtagcatggttattcctgttttctatggcatag 26848840  T
Q  168 aacctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgc 266  Q
    ||||| ||||  | |||||||||| | | |||||||||| |||| ||| ||||||||||||||| ||| |||||||||||| ||| |||||||||  |||    
T  26848841 aaccttctcatgtgcgacatcagaatagtagttatggtgaagca-cttgctaagcatgaagaggtgtttcaaaataacaaggaaagcatggagcgtttgc 26848939  T
Q  267 gtcaatgg 274  Q
    || |||||    
T  26848940 gtaaatgg 26848947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 28297821 - 28297760
Alignment:
Q  66 ccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 127  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28297821 ccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28297760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 28514252 - 28514313
Alignment:
Q  66 ccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 127  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28514252 ccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 28514313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 2184369 - 2184417
Alignment:
Q  68 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattc 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 26861642 - 26861750
Alignment:
Q  13 atcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatc 112  Q
    |||||||  ||| ||||||||||| || |  || ||||||||  | ||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||    
T  26861642 atcactcgacaatgccattgaagagtctagaattttcattcctgtgttttctgccaactatgcctcttcgtcattttgtttggatgaacttgtccaaatc 26861741  T
Q  113 attcactgc 121  Q
    ||| |||||    
T  26861742 attaactgc 26861750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 26975134 - 26975182
Alignment:
Q  69 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattca 26975182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 28234589 - 28234692
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  28234589 catcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacat 28234688  T
Q  112 catt 115  Q
    ||||    
T  28234689 catt 28234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 25071741 - 25071791
Alignment:
Q  69 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcact 119  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcact 25071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 26937174 - 26937236
Alignment:
Q  67 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 129  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  26937174 caactatgccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagac 26937236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 26802467 - 26802584
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||||||||||||||||||||||| |  || || |||||  | ||||||  ||||||||| |||||   |||||| |||||||||||||| |||||    
T  26802467 catcactcatcaaggccattgaagaatctagaatttttattcctgtgttttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacat 26802566  T
Q  112 cattcactgctacaagac 129  Q
     ||||| ||||| |||||    
T  26802567 tattcattgctataagac 26802584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 28325515 - 28325616
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    |||||||||||||||| || | ||| |||||||| || || |||  ||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||    
T  28325515 tcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactg 28325614  T
Q  121 ct 122  Q
    ||    
T  28325615 ct 28325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 2184980 - 2185027
Alignment:
Q  69 actatgcatcttcttcattttgtttggacgaacttgtccacatcattc 116  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattc 2185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 27214498 - 27214557
Alignment:
Q  68 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 127  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27214557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 27234730 - 27234671
Alignment:
Q  68 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 127  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27234671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 28781164 - 28781281
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| |||||||||| |||||||| | ||| || |||||  | ||||||  |||||||||  ||||   |||||| |||||||||||||| |||||    
T  28781164 catcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttgcttggacgaacttgttcacat 28781263  T
Q  112 cattcactgctacaagac 129  Q
     ||||| |||||||||||    
T  28781264 tattcattgctacaagac 28781281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 25506961 - 25506899
Alignment:
Q  197 agttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    |||||||||||  |||| |||||||||||||||  ||| |||||||| |||||||||||||||    
T  25506961 agttatggtgaagatctgactaagcatgaagagaagtttcaaaataataagaaaaacatggag 25506899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  68 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 122  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||| ||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 25071888 - 25071933
Alignment:
Q  216 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 261  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||    
T  25071888 ctaagcatgaagaggggtttcaaaataacaaggaacacatggagcg 25071933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 27214649 - 27214694
Alignment:
Q  216 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 261  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||    
T  27214649 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcg 27214694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 27234579 - 27234534
Alignment:
Q  216 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 261  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||    
T  27234579 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcg 27234534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  71 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 122  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  71 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 122  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 26959250 - 26959296
Alignment:
Q  71 tatgcatcttcttcattttgtttggacgaacttgtccacatcattca 117  Q
    ||||| |||||||| |||| |||||| ||||||||||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattca 26959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 24715795 - 24715856
Alignment:
Q  197 agttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatgga 258  Q
    |||||||||||   |||| ||||||||||||| ||||| |||||||||||| || |||||||    
T  24715795 agttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatgga 24715856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 28786303 - 28786420
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| |||||||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  | ||   |||||| |||||||||||||| |||||    
T  28786303 catcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacat 28786402  T
Q  112 cattcactgctacaagac 129  Q
     ||||| |||||||||||    
T  28786403 tattcattgctacaagac 28786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 28792424 - 28792541
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| |||||||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  | ||   |||||| |||||||||||||| |||||    
T  28792424 catcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacat 28792523  T
Q  112 cattcactgctacaagac 129  Q
     ||||| |||||||||||    
T  28792524 tattcattgctacaagac 28792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 29826193 - 29826245
Alignment:
Q  153 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 205  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  29826193 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 29826245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 18731653 - 18731391
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| ||||||||||| || | ||||||||||||  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  18731653 catcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacat 18731554  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    ||| |||||||||||||| | | || |  | || ||||| ||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||| |||    
T  18731553 catgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacatcaaagtgggagttatggtgaacat 18731454  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || ||||||||  || || | |||||||||||||||||||||||||||||  ||| |||||||    
T  18731453 ctcactaagcacaaaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatgg 18731391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 18699549 - 18699287
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| ||||||||||| || | ||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||| |||||    
T  18699549 catcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgttcacat 18699450  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| |   || |  | || ||||| ||||||||||  || || |||||||||||||||||||| ||||||||||||||||| |||    
T  18699449 cattcactgctacaagacaaaaggtcgtctcgttttgcctgttttctatggcgtagatcctactcacatacgacatcaaagtgggagttatggtgaacat 18699350  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || |||||||| | | || | |||||||||||||||||||||||||||||  ||| |||||||    
T  18699349 ctcactaagcacggaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatgg 18699287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 18679716 - 18679454
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| ||||||||||| || | ||||||||||||  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  18679716 catcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacat 18679617  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | | || |  | || ||||| ||||||||||  ||||| |||||||||||| ||||||| ||||| ||||||||||| |||    
T  18679616 cattcactgctacaagacaaagggtcgtcttgttttgcctgttttctatgtcgtggatcctactcacatatgacatcaaagtggtagttatggtgaacat 18679517  T
Q  212 cttactaagca-tgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || ||||| || |||| || | |||||||||||||| ||||||||||||||  ||| |||||||    
T  18679516 ctcactaatcactgaa-agagtttccaaaataacaataaaaacatggagcggttgcatcaatgg 18679454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 18724234 - 18723972
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| ||||||||||| || | ||||||||||||  | ||||||  ||||||||| |||||||||||||||||| ||||||||||||||||    
T  18724234 catcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttgaacgaacttgtccacat 18724135  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    ||| |||||||||||||| | | || |  | || ||||| ||||||||||  ||||| |||| |||||||||||| || ||||||||||||||||| |||    
T  18724134 catgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacaccaaagtgggagttatggtgaacat 18724035  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || ||||||||  ||  | | |||||||||||||||||||||||||||||  ||| |||||||    
T  18724034 ctcactaagcacaaaatgagtttccaaaataacaagaaaaacatggagcggttgcatcaatgg 18723972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 18655626 - 18655364
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| |||||| |||| || | |||||| |||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||| |||    
T  18655626 catcactcgacaatgccattcaagagtctaggatctttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccgcat 18655527  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||| | | || |  | || || || ||||||||||  ||||| |||||||||||||||||||| | ||| ||||||||||| |||    
T  18655526 cattcactgctacaagacaaagggtcgtctcgtttttcctgttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggtgaacat 18655427  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || ||||||||   | ||   |||||||||||||||||||||||||||||  ||| |||||||    
T  18655426 ctcactaagcacagaaagaatttccaaaataacaagaaaaacatggagcggttgcatcaatgg 18655364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 18073804 - 18073950
Alignment:
Q  29 attgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaaga 128  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| |    
T  18073804 attgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaa 18073903  T
Q  129 cgacgagttgcttagtattgcccgttttctatgatgtggaacctact 175  Q
    | | | ||||| | || ||||| ||||||| || |||||||||||||    
T  18073904 ccaagggttgcctcgttttgcctgttttctttggtgtggaacctact 18073950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 17989185 - 17989088
Alignment:
Q  29 attgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaa 126  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  17989185 attgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaa 17989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 5091059 - 5090921
Alignment:
Q  69 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtgga 168  Q
    ||||||| |||||||| |||||||| || ||||||||||| || |||||||||| ||||   |   ||||| | || |||||  ||||||||| ||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtgga 5090960  T
Q  169 acctactcacatacgacatcagagtgggagttatggtga 207  Q
    |||| ||||  | ||| |||||| ||| |||||||||||    
T  5090959 accttctcatgtgcgatatcagactggaagttatggtga 5090921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 268506 - 268244
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    ||||||||  ||| ||||||||||| || | ||| || |||||  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  268506 catcactcgacaatgccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacat 268407  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcat 211  Q
    |||||||||||||||||  | | || |  |  | |||||||| |||||||  ||||| |||||||||||||||||||| ||||||||||||||||| |||    
T  268406 cattcactgctacaagaaaaagggtcgtctcattttgcccgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacat 268307  T
Q  212 cttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatgg 274  Q
    || |||||||| |||||| | |||||||||| ||||||||||||||||||  ||| |||||||    
T  268306 ctcactaagcacgaagagagtttccaaaatagcaagaaaaacatggagcggttgcatcaatgg 268244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 28127817 - 28127578
Alignment:
Q  23 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 122  Q
    ||||||||||||||||| |  || || |||||  |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28127817 aaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaacttgtgcacatcattcactgct 28127718  T
Q  123 acaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagca 222  Q
    ||||||| | | || || |||| ||||| ||||||| ||  ||||| |||||| |  | ||| |||| |  ||||||||||||||  | ||| |||||||    
T  28127717 acaagacaaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagttatggtgaagagcttgctaagca 28127618  T
Q  223 tgaagaggggttccaaaataacaagaaaaacatggagcga 262  Q
    || |||| ||||||||||||||||||||||||||||||||    
T  28127617 tggagagaggttccaaaataacaagaaaaacatggagcga 28127578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 262
Target Start/End: Complemental strand, 28164456 - 28164262
Alignment:
Q  67 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 166  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || || |||| ||||| ||||||| ||  |||    
T  28164456 caactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttct-tggcgtg 28164358  T
Q  167 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcga 262  Q
    || |||||| |  | |||||||| |  |||||||||||  |  |||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  28164357 gatcctactgatgtgcgacatcatacagggagttatggcaaagatcttactaagcatggtgagaggttccaaaataacaagaaaaacatggagcga 28164262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 258
Target Start/End: Complemental strand, 29273877 - 29273686
Alignment:
Q  67 caactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtg 166  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |  |  | ||||| || |||||||  |||    
T  29273877 caactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgtctcattttgcctgtcttctatggcgtg 29273778  T
Q  167 gaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatgga 258  Q
    || |||||||||||||||||||| ||||||||||||||||| ||||| |||||| | |||||| | |||||||||| |||||||||||||||    
T  29273777 gatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagtacgaagagagtttccaaaatagcaagaaaaacatgga 29273686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 59612 - 59758
Alignment:
Q  29 attgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaaga 128  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| |    
T  59612 attgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcattcactgctacaaaa 59711  T
Q  129 cgacgagttgcttagtattgcccgttttctatgatgtggaacctact 175  Q
    | | | ||||| | || ||||| ||||||| || |||||||||||||    
T  59712 ccaagggttgcctcgttttgcctgttttctttggtgtggaacctact 59758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 3584 - 3466
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaac-tatgcatcttcttcattttgtttggacgaacttgtccaca 110  Q
    |||||||| ||||||||||||| ||||| | ||| || |||||  | ||||||  |||| ||||| ||||||||||||||||||||||||||||||||||    
T  3584 catcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcattttgtttggacgaacttgtccaca 3485  T
Q  111 tcattcactgctacaagac 129  Q
    |||||||||||||||||||    
T  3484 tcattcactgctacaagac 3466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 14517 - 14323
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| | |||||| ||||||||||||||||||||||||||    
T  14517 catcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttgtttggacgaacttgtccacat 14419  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga 207  Q
     ||||||||||||||||| | | || || | || ||||| |||||||  |  |||||||||||| || | ||||||||||  || |||||||||||    
T  14418 aattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtga 14323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 42991 - 43184
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  42991 catcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacat 43090  T
Q  112 cattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 205  Q
    ||||||||||| |||||  |   |  || |||| |||||  |||||||||||||||||||| || || |  ||||||||| ||| |||||||||    
T  43091 cattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaaccttctaacgtgagacatcagattggcagttatggt 43184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 27469 - 27588
Alignment:
Q  8 acatcatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 107  Q
    |||||||||||  |||||| |||||||||||| | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||    
T  27469 acatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtcc 27568  T
Q  108 acatcattcactgctacaag 127  Q
    |||||||||| |||| ||||    
T  27569 acatcattcattgcttcaag 27588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 34750 - 34865
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  |||||||||||||||| || | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  34750 catcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacat 34849  T
Q  112 cattcactgctacaag 127  Q
    ||||||||||| ||||    
T  34850 cattcactgcttcaag 34865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 116830 - 116931
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    |||||||||||||||| || | ||| |||||||| || || |||  ||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||    
T  116830 tcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactg 116929  T
Q  121 ct 122  Q
    ||    
T  116930 ct 116931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 58444 - 58334
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||  ||||||||||| |||| || | ||| ||||||||| | || |||  ||||||||| |||||||||||||| ||| ||||||||||||||||    
T  58444 catcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacat 58345  T
Q  112 cattcactgct 122  Q
    |||||||||||    
T  58344 cattcactgct 58334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 259
Target Start/End: Complemental strand, 4775 - 4586
Alignment:
Q  70 ctatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacgacgagttgcttagtattgcccgttttctatgatgtggaa 169  Q
    |||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||||| | | || || | || ||||| |||||||  |  ||||||    
T  4775 ctatgccttttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaa 4676  T
Q  170 cctactcacatacgacatcagagtgggagttatggtg-agcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggag 259  Q
    |||||| || | ||||||| ||  || |||||||||| ||||| |  || |||||||| || |||| |||||| | ||||| |||||||||    
T  4675 cctactaacgtgcgacatctgaaaggtagttatggtgaagcat-tggctgagcatgaaaagaggtttcaaaatgataagaataacatggag 4586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 13794 - 13677
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| |||||||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  ||||   |||||| |||||||||||||| |||||    
T  13794 catcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacat 13695  T
Q  112 cattcactgctacaagac 129  Q
     ||||| |||||||||||    
T  13694 tattcattgctacaagac 13677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 3279722 - 3279823
Alignment:
Q  21 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 120  Q
    |||||||||| ||||| |||| ||| || |||||  | || |||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||    
T  3279722 tcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcattg 3279821  T
Q  121 ct 122  Q
    ||    
T  3279822 ct 3279823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  69 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 122  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 17993676 - 17993597
Alignment:
Q  182 cgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcg 261  Q
    |||||||||| ||  ||||||||||| ||| ||| |||||||||||||||| || ||||||| |||| |||||||||||||    
T  17993676 cgacatcagaatgatagttatggtgaagca-cttgctaagcatgaagagggttttcaaaatagcaaggaaaacatggagcg 17993597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 3279857 - 3279908
Alignment:
Q  153 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 204  Q
    |||||||||||||||||||| | ||| | |||||||||| ||||||||||||    
T  3279857 ttttctatgatgtggaaccttcccacgtgcgacatcagactgggagttatgg 3279908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 7550 - 7667
Alignment:
Q  12 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 111  Q
    |||||||| |||||||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  ||||   |||||| |||||||||||||| |||||    
T  7550 catcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacat 7649  T
Q  112 cattcactgctacaagac 129  Q
     ||||| |||||||||||    
T  7650 tattcattgctacaagac 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University