View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_38 (Length: 253)
Name: NF18583_low_38
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 29287644 - 29287406
Alignment:
| Q |
13 |
aatattcccgtatataaataaaacaagtgtattactaatactattgagtcttctatgtttcatgtgttttttcttcttttgcaagcaatgcttaattacg |
112 |
Q |
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| T |
29287644 |
aatattcccgtatataaataaaacaagtgtattactaatactattgagtcttctatgtttcatgtgttttttcttcttttgcaagcaatgcttaattacg |
29287545 |
T |
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| Q |
113 |
aaacataatttttgttatatggttttgtttttggagtgtaacatcaatacactctttagcatatattttccaatccctcaaaattttgtgtgaatcatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29287544 |
aaacataatttttgttatatggttttgtttttggagggtaacatcaatacactctttagcatatattttccaatccctcaaaa--ttgtgtgaatcatat |
29287447 |
T |
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| Q |
213 |
ttatattttgaagagtaaatcattgtttcagtcttcaaaat |
253 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
29287446 |
ttatattttgaaaagtaaatcattgtttcagtcttcaaaat |
29287406 |
T |
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