View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_40 (Length: 250)
Name: NF18583_low_40
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 10129036 - 10128816
Alignment:
| Q |
51 |
gtgaaaattcaaactagtcatttgacaaaattatgtgccattttagtcctttaagaatgacattagtctcttttgaat---------------------t |
129 |
Q |
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| T |
10129036 |
gtgaaaattcaaactagtcatttgacaaaactatgtgccattttagtcctttaagaatgacattagtctcttttgaatgataaaactattgcattaaatt |
10128937 |
T |
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| Q |
130 |
aaggactaacatgtcttcattttatcattctcatgattgattatgactttttctcaggattgaaatggtacacttggtttttatcagaaactaatttgga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10128936 |
aaggactaacatgtcttcattttatcattctcatgattgattatgactttttctcaggattgaaatggtacacttggtttttatcagaaactaatttgga |
10128837 |
T |
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| Q |
230 |
aataatatgcaggatggtgcc |
250 |
Q |
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||||||||||||||||||||| |
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| T |
10128836 |
aataatatgcaggatggtgcc |
10128816 |
T |
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