View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18583_low_45 (Length: 238)

Name: NF18583_low_45
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18583_low_45
NF18583_low_45
[»] chr7 (4 HSPs)
chr7 (17-238)||(44346406-44346627)
chr7 (49-199)||(48888139-48888289)
chr7 (62-199)||(6232179-6232317)
chr7 (75-187)||(19883474-19883586)
[»] chr4 (5 HSPs)
chr4 (17-238)||(55353488-55353709)
chr4 (49-199)||(18848013-18848163)
chr4 (17-187)||(55329077-55329247)
chr4 (50-199)||(42111003-42111152)
chr4 (122-167)||(29083194-29083239)
[»] chr2 (3 HSPs)
chr2 (68-154)||(38971026-38971112)
chr2 (107-153)||(16080468-16080514)
chr2 (112-149)||(9017449-9017486)
[»] chr8 (4 HSPs)
chr8 (68-196)||(42202667-42202795)
chr8 (50-199)||(44684431-44684580)
chr8 (95-150)||(25967870-25967925)
chr8 (115-149)||(3578043-3578077)
[»] chr3 (2 HSPs)
chr3 (68-199)||(51361250-51361381)
chr3 (114-162)||(53327336-53327384)
[»] chr6 (1 HSPs)
chr6 (62-199)||(380659-380797)
[»] chr5 (3 HSPs)
chr5 (49-197)||(42628995-42629143)
chr5 (68-146)||(3678282-3678360)
chr5 (49-147)||(2756348-2756446)
[»] scaffold0691 (1 HSPs)
scaffold0691 (50-199)||(1138-1287)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 44346406 - 44346627
Alignment:
Q  17 aggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatcctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  44346406 aggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtgtaattgggcgaattctagacttaaaagtcctcctt 44346505  T
Q  117 gcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttgcagttggtgtttgctgt 216  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44346506 gcctcttttacaagtggtgctggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttgcagttggtgtttgctgt 44346605  T
Q  217 ttttcggttgtgcctttctgct 238  Q
    ||||||||||||||||||||||    
T  44346606 ttttcggttgtgcctttctgct 44346627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 48888139 - 48888289
Alignment:
Q  49 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaa 148  Q
    |||||| || |||||||| |||||||| ||||||||||||| |||||||||||| || |||| ||||||||||| |||||| |||||||||||||||||     
T  48888139 tgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctagactaaagagtcctccttgcctctattacgagtggtgttggaaccccaag 48888238  T
Q  149 gaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    ||||| |||||| | | ||||||| ||||  ||||||||  ||||||||||    
T  48888239 gaatgtcttttgagattggtggggtagttctagaggtgtccgggacttttg 48888289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 6232179 - 6232317
Alignment:
Q  62 gatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgc 161  Q
    ||||| |||||| |||||||||||||||| |||||||||||||  |||| ||| ||||||| |||||| ||||| ||||||||||| |||||| | |||     
T  6232179 gatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattga 6232278  T
Q  162 g-ttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    | | | |||||| ||||| ||||||||  ||||||||||    
T  6232279 gataatgtggggcagttttagaggtgtccgggacttttg 6232317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 19883586 - 19883474
Alignment:
Q  75 tttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaa 174  Q
    |||||||||||||||||   |||||||| || |||| ||| ||||||| |||||| ||||||||||||||||| |||||  | ||| | ||| ||||| |    
T  19883586 tttcgtggaattgggcggtgtctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagatagttggggta 19883487  T
Q  175 gtttcagaggtgt 187  Q
    |||| ||||||||    
T  19883486 gttttagaggtgt 19883474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 55353488 - 55353709
Alignment:
Q  17 aggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatcctt 116  Q
    ||||| |||||| ||||| |||||||||| ||||| ||||| ||||| ||||||||| | |||||||||||||||||||| ||||||||||||| |||||    
T  55353488 aggattttcaattctcttgtcaaggatgttgctgatatcgttgatgacatcaaggtgatctcgtggaattgggcgaattccagacttaaaagtcctcctt 55353587  T
Q  117 gcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttgcagttggtgtttgctgt 216  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||| |||||||||||||  ||||||| ||| ||||||||||||||||    
T  55353588 gcctcttttacgattggtgctggaaccccaagaaatgccttttgcgataggtggggtagtttcagaggtggcagggactattgtagttggtgtttgctgt 55353687  T
Q  217 ttttcggttgtgcctttctgct 238  Q
    |||| |||||||||||||||||    
T  55353688 tttttggttgtgcctttctgct 55353709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 18848013 - 18848163
Alignment:
Q  49 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaa 148  Q
    |||||| || ||||| || |||||||||| |||||||||||||  | ||||||||||||||| ||| ||||||| |||||| |||||||||||||||||     
T  18848013 tgaaattgttgatgacattaaggtgctttggtggaattgggcggttactagacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaag 18848112  T
Q  149 gaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    |||||||| ||| | ||| ||||| ||||| ||||||||  ||||||||||    
T  18848113 gaatgcctattgagatagttggggtagttttagaggtgtccgggacttttg 18848163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 55329077 - 55329247
Alignment:
Q  17 aggatattcaatactcttttcaaggatgtggctgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatcctt 116  Q
    ||||| |||||||  ||||| |||||| | | |||||| || || || || |||||| ||||||| |||||  ||||||| |||||||| |||  |||||    
T  55329077 aggattttcaataaccttttgaaggattttggtgaaattgtggaggaaattaaggtgatttcgtgaaattgaacgaattcaagacttaagagttctcctt 55329176  T
Q  117 gcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttaggtggggaagtttcagaggtgt 187  Q
    |||||| |||||| ||||||||||||| ||| |||||| | ||| | ||||||||| ||||| ||||||||    
T  55329177 gcctctattacgagtggtgttggaacctcaaggaatgcttattgagataggtggggcagttttagaggtgt 55329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 42111152 - 42111003
Alignment:
Q  50 gaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaag 149  Q
    ||||| || ||||| || |||||||| || ||||||||||||| | | |||||||| |||| ||  ||||||||||  || ||||||||||||||||| |    
T  42111152 gaaattgttgatgacattaaggtgctctcttggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaagg 42111053  T
Q  150 aatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    ||||| |  | ||  |||||||| ||||| ||||||||  ||||||||||    
T  42111052 aatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttg 42111003  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 29083194 - 29083239
Alignment:
Q  122 ttttacgattggtgttggaaccccaaagaatgccttttgcgttagg 167  Q
    ||||| || |||||||||||||| ||||||||||||||||| ||||    
T  29083194 ttttatgaatggtgttggaacccaaaagaatgccttttgcgatagg 29083239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 38971026 - 38971112
Alignment:
Q  68 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgc 154  Q
    |||||| |||||||||||||||| ||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  38971026 aaggtgatttcgtggaattgggcaaattctagacttaaaagtcctcattgcctctattacgagtggtgttggaaccccaaagaatgc 38971112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 16080468 - 16080514
Alignment:
Q  107 agtcatccttgcctcttttacgattggtgttggaaccccaaagaatg 153  Q
    |||| ||||||||||||||| || ||||||||||||||||| |||||    
T  16080468 agtcctccttgcctcttttatgagtggtgttggaaccccaaggaatg 16080514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 9017486 - 9017449
Alignment:
Q  112 tccttgcctcttttacgattggtgttggaaccccaaag 149  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  9017486 tccttgcctcttctacgattggagttggaaccccaaag 9017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 42202667 - 42202795
Alignment:
Q  68 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttagg 167  Q
    |||||| ||| ||||||||||| ||||||||||||||| |||| ||||||||||| |||||| |||||||||||||| |  |||||| | ||| | |||     
T  42202667 aaggtgattttgtggaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttggaaccctatcgaatgcttattgagataga 42202766  T
Q  168 tggggaagtttcagaggtgttagggactt 196  Q
    ||||| ||||| ||||||||  |||||||    
T  42202767 tggggcagttttagaggtgtctgggactt 42202795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 44684431 - 44684580
Alignment:
Q  50 gaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaag 149  Q
    ||||| || ||||| || |||||||| || ||||||||||||| | | | |||||| |||| ||| ||||||||||| || ||||||||||||||||| |    
T  44684431 gaaattgttgatgacattaaggtgctctcttggaattgggcgattacaaaacttaagagtcctccctgcctcttttatgagtggtgttggaaccccaagg 44684530  T
Q  150 aatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    ||||| |  | ||  |||||||| ||||| ||||||||  ||||||||||    
T  44684531 aatgcttgctccgacaggtggggtagttttagaggtgtctgggacttttg 44684580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 25967925 - 25967870
Alignment:
Q  95 tctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaaga 150  Q
    |||||| | ||||||| |||||||||||||||||| ||| | ||||||||||||||    
T  25967925 tctagattaaaaagtcctccttgcctcttttacgagtggagctggaaccccaaaga 25967870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 3578077 - 3578043
Alignment:
Q  115 ttgcctcttttacgattggtgttggaaccccaaag 149  Q
    ||||||||||||||| |||||||||||||||||||    
T  3578077 ttgcctcttttacgagtggtgttggaaccccaaag 3578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 51361250 - 51361381
Alignment:
Q  68 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcgttagg 167  Q
    |||||||||| |||||||||| ||  | ||||||| ||||||  ||| ||||||| ||| || ||||||||||||||||| |||||||| ||| | |||     
T  51361250 aaggtgcttttgtggaattggacggttactagactcaaaagttctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagatagt 51361349  T
Q  168 tggggaagtttcagaggtgttagggacttttg 199  Q
    ||||| ||||| |||||||| |||||||||||    
T  51361350 tggggtagttttagaggtgtcagggacttttg 51361381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 53327384 - 53327336
Alignment:
Q  114 cttgcctcttttacgattggtgttggaaccccaaagaatgccttttgcg 162  Q
    ||||||| |||||||| |||||||||||||| || || |||||||||||    
T  53327384 cttgccttttttacgaatggtgttggaacccaaaggagtgccttttgcg 53327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 380797 - 380659
Alignment:
Q  62 gatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaagaatgccttttgc 161  Q
    ||||| |||||| |||||||||||||||| |||||||||||||  |||| ||| ||||||| |||||| ||||| ||||||||||| |||||| | |||     
T  380797 gatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattga 380698  T
Q  162 g-ttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    | | | |||||| ||||| ||||||||  ||||||||||    
T  380697 gataacgtggggcagttttagaggtgtccgggacttttg 380659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 42629143 - 42628995
Alignment:
Q  49 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaa 148  Q
    |||||| || ||||| || | ||||||||||||||||||||||  | ||||||| ||||||| ||| ||||||| ||| || |||||| ||||||||||     
T  42629143 tgaaattgttgatgaaattatggtgctttcgtggaattgggcggttactagactgaaaagtcctccctgcctctattatgagtggtgtcggaaccccaag 42629044  T
Q  149 gaatgccttttgcgttaggtggggaagtttcagaggtgttagggacttt 197  Q
    ||||| ||| || | ||| ||||| ||||| ||||| ||  ||||||||    
T  42629043 gaatgtcttctgagatagttggggtagttttagaggcgtccgggacttt 42628995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 3678360 - 3678282
Alignment:
Q  68 aaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaacccca 146  Q
    |||||| ||||||||||||||| || | |||||||||| |||| ||||||||||| |||| | | ||||||||||||||    
T  3678360 aaggtgatttcgtggaattgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttggaacccca 3678282  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 2756446 - 2756348
Alignment:
Q  49 tgaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaa 147  Q
    |||||| || ||||| || |||||||||||||||||||||  |  ||||||||| || || | ||| ||||| | |||||| |||||||||||||||||    
T  2756446 tgaaattgttgatgagattaaggtgctttcgtggaattggatggtttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaa 2756348  T

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Target: scaffold0691 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 1138 - 1287
Alignment:
Q  50 gaaatcgtagatgatatcaaggtgctttcgtggaattgggcgaattctagacttaaaagtcatccttgcctcttttacgattggtgttggaaccccaaag 149  Q
    ||||| || ||||| || ||||||||  | ||||||||||||| | | |||||||| |||| ||| ||||||||||| || ||||||||||| ||||| |    
T  1138 gaaattgttgatgacattaaggtgctcccttggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtggtgttggaagcccaagg 1237  T
Q  150 aatgccttttgcgttaggtggggaagtttcagaggtgttagggacttttg 199  Q
    ||||| |  | ||  |||||||| ||||| ||||||||  ||||||||||    
T  1238 aatgcttgctccgacaggtggggtagttttagaggtgtccgggacttttg 1287  T

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