View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_46 (Length: 237)
Name: NF18583_low_46
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28962534 - 28962762
Alignment:
| Q |
1 |
gtttttgtggtggtgatgacgatcatgttgcttgggctgaaagagagttgaaaaagtctgaaactttcaatgatagagcttcattgaagagagaaaaatc |
100 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28962534 |
gtttttgtggtggtgatgatgatcctgttgcttgggctcaaagggagttgaaaaagtctgaaacattcaatgatagagcttcattgaagagagaaaaatc |
28962633 |
T |
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| Q |
101 |
aatgagtcctgaagaattgaataaaagagctgaagcttttatcaagaagtttaataatcaaatgaagttgcagaggatggaatcttatcatcgttttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962634 |
aatgagtcctgaagaattgaataaaagagctgaagcttttatcaagaagtttaataatcaaatgaagttgcagaggatggaatcttatcatcgttttatg |
28962733 |
T |
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| Q |
201 |
aaattaaataaaagggtttgatgatgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28962734 |
aaattaaataaaagggtttgatgatgatg |
28962762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 29002263 - 29002467
Alignment:
| Q |
1 |
gtttttgtggtggtgatgacgatcatgttgcttgggctgaaagagagttgaaaaagtctgaaactttcaatgatagagcttcattgaagagagaaaaatc |
100 |
Q |
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||||| || |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29002263 |
gttttggtagtggtgatgatgatcctgttgcttgggctgaaagggagttgaaaaagtctgaaactttcaatgatagagcttcattgaaaagagaaaaatc |
29002362 |
T |
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| Q |
101 |
aatgagtcctgaagaattgaataaaagagctgaagcttttatcaagaagtttaataatcaaatgaagttgcagaggatggaatcttatcatcgttttatg |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| || |
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| T |
29002363 |
aatgagtcctgaggaattgaataaaagagctgaagcttttatcaagaagtttaataatcagatgaagttgcagaggcttgaatcttatcagcgttttctg |
29002462 |
T |
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| Q |
201 |
aaatt |
205 |
Q |
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||||| |
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| T |
29002463 |
aaatt |
29002467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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