View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_5 (Length: 473)
Name: NF18583_low_5
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 38709556 - 38709084
Alignment:
| Q |
1 |
aatgatgtccgatagataagtcctggaggttcagatcgaattgctagatatatgatatttcatagttataacccgagacatatctactaaattgattccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709556 |
aatgatgtccgatagataagtcctggaggttcagatcgaattgctagatatatgatatctcatagttataacccgagacatatctactaaattgattccc |
38709457 |
T |
|
| Q |
101 |
ttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaactaaagtgacatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38709456 |
ttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcattcaagaactaaagtgacatag |
38709357 |
T |
|
| Q |
201 |
cccaagacattcacttaaaaacttagttacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagttttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709356 |
cccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatatccattttcaccgacagttttt |
38709257 |
T |
|
| Q |
301 |
ggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttccct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38709256 |
ggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctccattcttttccacacggtatgacaagtcacttccct |
38709157 |
T |
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| Q |
401 |
taggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcact |
473 |
Q |
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| T |
38709156 |
taggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcact |
38709084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 236 - 463
Target Start/End: Complemental strand, 10047358 - 10047131
Alignment:
| Q |
236 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
335 |
Q |
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|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
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| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
336 |
catcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctca |
435 |
Q |
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|| ||||||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||| | |||||||| |||||| |
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| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
436 |
tcaattttttcctttatatacatcatag |
463 |
Q |
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||||||| |||| ||||| |||||||| |
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| T |
10047158 |
tcaatttcttcccttataagcatcatag |
10047131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
126 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
189 |
Q |
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|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
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| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 310 - 442
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
310 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
409 |
Q |
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|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
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| Q |
410 |
catcaatgtatacagttgtgttctcatcaattt |
442 |
Q |
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|||| ||||| || ||||| ||||||||||||| |
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| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 470
Target Start/End: Original strand, 739517 - 739691
Alignment:
| Q |
296 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
395 |
Q |
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||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
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| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
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| Q |
396 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctc |
470 |
Q |
| |
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||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |
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| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctc |
739691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 25078763 - 25078815
Alignment:
| Q |
134 |
actaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaa |
186 |
Q |
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|||||||||||||| ||| ||| || ||||||||| |||||| |||||||||| |
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| T |
25078763 |
actaataaaagagacactcgtggatgtgtttgcaatttcgatacattcaagaa |
25078815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
108 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
181 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
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| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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