View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18583_low_50 (Length: 220)

Name: NF18583_low_50
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18583_low_50
NF18583_low_50
[»] chr1 (4 HSPs)
chr1 (17-199)||(38137260-38137442)
chr1 (102-131)||(48033964-48033993)
chr1 (103-131)||(4551129-4551157)
chr1 (103-131)||(32512133-32512161)
[»] chr7 (1 HSPs)
chr7 (102-131)||(44207699-44207728)
[»] chr6 (1 HSPs)
chr6 (103-131)||(6614896-6614924)
[»] chr5 (1 HSPs)
chr5 (103-131)||(11680227-11680255)
[»] chr4 (1 HSPs)
chr4 (103-131)||(2804411-2804439)
[»] chr3 (1 HSPs)
chr3 (103-131)||(46055790-46055818)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 38137442 - 38137260
Alignment:
Q  17 aatatctgccaattcaacacaaaaaacaagttataagtaaaataaatgtttttcaacagtactacaataaaggaaaaacaacaattttttccaacacaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38137442 aatatctgccaattcaacacaaaaaacaagttataagtaaaataaatgtttttcaacagtactacaataaaggaaaaacaacaattttttccaacacaat 38137343  T
Q  117 atttctatttttgtttccctaaaataaatatactatactaacaacaagtcaaaaaatgcaaatgtgacaacaatacagcatat 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38137342 atttctattttcgtttccctaaaataaatatactatactaacaacaagtcaaaaaatgcaaatgtgacaacaatacagcatat 38137260  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 48033964 - 48033993
Alignment:
Q  102 tttttccaacacaaaatttctatttttgtt 131  Q
    ||||||||||||||||||||||||||||||    
T  48033964 tttttccaacacaaaatttctatttttgtt 48033993  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 4551129 - 4551157
Alignment:
Q  103 ttttccaacacaaaatttctatttttgtt 131  Q
    |||||||||||||||||||||||||||||    
T  4551129 ttttccaacacaaaatttctatttttgtt 4551157  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 32512133 - 32512161
Alignment:
Q  103 ttttccaacacaaaatttctatttttgtt 131  Q
    |||||||||||||||||||||||||||||    
T  32512133 ttttccaacacaaaatttctatttttgtt 32512161  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 44207699 - 44207728
Alignment:
Q  102 tttttccaacacaaaatttctatttttgtt 131  Q
    ||||||||||||||||||||||||||||||    
T  44207699 tttttccaacacaaaatttctatttttgtt 44207728  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 6614924 - 6614896
Alignment:
Q  103 ttttccaacacaaaatttctatttttgtt 131  Q
    |||||||||||||||||||||||||||||    
T  6614924 ttttccaacacaaaatttctatttttgtt 6614896  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 11680255 - 11680227
Alignment:
Q  103 ttttccaacacaaaatttctatttttgtt 131  Q
    |||||||||||||||||||||||||||||    
T  11680255 ttttccaacacaaaatttctatttttgtt 11680227  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 2804411 - 2804439
Alignment:
Q  103 ttttccaacacaaaatttctatttttgtt 131  Q
    |||||||||||||||||||||||||||||    
T  2804411 ttttccaacacaaaatttctatttttgtt 2804439  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 46055818 - 46055790
Alignment:
Q  103 ttttccaacacaaaatttctatttttgtt 131  Q
    |||||||||||||||||||||||||||||    
T  46055818 ttttccaacacaaaatttctatttttgtt 46055790  T

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