View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18583_low_7 (Length: 461)
Name: NF18583_low_7
Description: NF18583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18583_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 151 - 444
Target Start/End: Original strand, 3095570 - 3095863
Alignment:
| Q |
151 |
atatgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3095570 |
atatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
3095669 |
T |
|
| Q |
251 |
gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3095670 |
gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
3095769 |
T |
|
| Q |
351 |
caatcctaatcatcctgcattttcagttggaagaaaagtaactgatgatcaatcaacatctaaagcttccaaagatctttctgttaatgaagtt |
444 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3095770 |
caatcctaatcatccagcattttcagttggaagaaaagtaactgatgatcaatcaacatctaaagcttccaaagatccttctgttaatgaagtt |
3095863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 151 - 443
Target Start/End: Original strand, 3081133 - 3081425
Alignment:
| Q |
151 |
atatgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081133 |
atatgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaat |
3081232 |
T |
|
| Q |
251 |
gcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
350 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081233 |
gcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcc |
3081332 |
T |
|
| Q |
351 |
caatcctaatcatcctgcattttcagttggaagaaaagtaactgatgatcaatcaacatctaaagcttccaaagatctttctgttaatgaagt |
443 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| || | | |||||||||| ||||||||||| |||| |||||| |||||||| |
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| T |
3081333 |
caatcctaatcatccagcattttcagttggaagaaaagtagtggaaggtgaatcaacatcaaaagcttccaatgatccttctgtcaatgaagt |
3081425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 153 - 400
Target Start/End: Complemental strand, 4547359 - 4547112
Alignment:
| Q |
153 |
atgcatgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||| || || |
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| T |
4547359 |
atgcatgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgt |
4547260 |
T |
|
| Q |
253 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca |
352 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
4547259 |
atacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatagcacttccca |
4547160 |
T |
|
| Q |
353 |
atcctaatcatcctgcattttcagttggaagaaaagtaactgatgatc |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4547159 |
atcctaaacatcctgcattttcagttggaagaaaagtaaatgatgatc |
4547112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 4547728 - 4547669
Alignment:
| Q |
7 |
tcgaagaatatggtcaaagtcttcttatatatgtgagtttttctcctttcatattagtta |
66 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
4547728 |
tcgaagaacatggtcaaagtcttcttatatatgtaagtttttctcctttcgtattagtta |
4547669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 4547618 - 4547578
Alignment:
| Q |
69 |
aattaatagggttaactatattattgatttctataaaattg |
109 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||| |
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|
| T |
4547618 |
aattaacagggttaactataatattgatttctttaaaattg |
4547578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 157 - 385
Target Start/End: Complemental strand, 15696681 - 15696453
Alignment:
| Q |
157 |
atgcagagttggaatctttggtgtgaaggaaaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatac |
256 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||| | |||||||||| | ||||| |||||| || ||| ||||| || ||||||| |
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|
| T |
15696681 |
atgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatgaagtgcatac |
15696582 |
T |
|
| Q |
257 |
acattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcc |
356 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| | ||| ||||||||||||||| || |||| ||||||| |||||||||||| | |||| || || |
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| T |
15696581 |
acattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaatgcccattccaaaacc |
15696482 |
T |
|
| Q |
357 |
taatcatcctgcattttcagttggaagaa |
385 |
Q |
| |
|
|| || || ||||||||||| ||||||| |
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|
| T |
15696481 |
caagcaaccggcattttcagtaggaagaa |
15696453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 15721894 - 15721754
Alignment:
| Q |
237 |
tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac |
336 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| ||||||| |||||||| ||||||| |||||| |
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|
| T |
15721894 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
15721795 |
T |
|
| Q |
337 |
acaatgacacttcccaatcctaatcatcctgcattttcagt |
377 |
Q |
| |
|
||||| || ||||| ||||| || | || ||||||||||| |
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|
| T |
15721794 |
acaataacccttccaaatcccaagccaccagcattttcagt |
15721754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 15692193 - 15692058
Alignment:
| Q |
250 |
tgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttc |
349 |
Q |
| |
|
|||||| |||| ||| | |||||||| ||||||||||| | ||||||||||||||||| | ||||||||||||| | || |||||||||||||| |||| |
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|
| T |
15692193 |
tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttc |
15692094 |
T |
|
| Q |
350 |
ccaatcctaatcatcctgcattttcagttggaagaa |
385 |
Q |
| |
|
| || || || || |||||||||||| ||||||||| |
|
|
| T |
15692093 |
caaaacccaaacaacctgcattttcaattggaagaa |
15692058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 15703189 - 15703096
Alignment:
| Q |
249 |
atgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatg |
342 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||| ||| ||||||||||||||| || ||| | ||||||| ||||||||||||| |
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|
| T |
15703189 |
atgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacacaatg |
15703096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 15763724 - 15763667
Alignment:
| Q |
253 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
15763724 |
atacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttcca |
15763667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 15804756 - 15804699
Alignment:
| Q |
253 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca |
310 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
15804756 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca |
15804699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 15799142 - 15799056
Alignment:
| Q |
253 |
atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacaca |
339 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||| |||||| ||||||| ||||||||| |
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|
| T |
15799142 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacaca |
15799056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
| Q |
237 |
tgaagttattaaatgcatacacattggtttgttgtgtgtacaagaa |
282 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
47593954 |
tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa |
47593999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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