View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_high_12 (Length: 300)
Name: NF18584_high_12
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 8375104 - 8374812
Alignment:
| Q |
1 |
tgagatttgtaaacaaaccatgtattg-----atgagaattgagagctgaaaaaatttgtgtatgaattgtagatgagagtttattgttttannnnnnng |
95 |
Q |
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| T |
8375104 |
tgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtagatgagagtttattgttttatttttttg |
8375005 |
T |
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| Q |
96 |
ataaaagatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagt |
195 |
Q |
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| T |
8375004 |
ataaaagatgagagtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagt |
8374905 |
T |
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| Q |
196 |
catgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatttcaacaagtttggctgcctt |
288 |
Q |
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| T |
8374904 |
catgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatttcaacaagtttggctgcctt |
8374812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
| Q |
101 |
agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga |
200 |
Q |
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| T |
8440070 |
agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa |
8440168 |
T |
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| Q |
201 |
gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt |
268 |
Q |
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| T |
8440169 |
ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt |
8440230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8439999 - 8440083
Alignment:
| Q |
1 |
tgagatttgtaaacaaaccatgta-----ttgatgagaattgagagctgaaaaaatttgtgtatgaattgtagatgagagtttat |
80 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8439999 |
tgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtagatgagagtttat |
8440083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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