View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18584_high_2 (Length: 746)

Name: NF18584_high_2
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18584_high_2
NF18584_high_2
[»] chr4 (41 HSPs)
chr4 (232-582)||(5472223-5472574)
chr4 (248-374)||(5449253-5449379)
chr4 (592-740)||(5472091-5472239)
chr4 (629-727)||(38721348-38721446)
chr4 (654-727)||(7614651-7614724)
chr4 (628-716)||(29051694-29051782)
chr4 (628-740)||(36523108-36523220)
chr4 (673-740)||(50181115-50181182)
chr4 (661-727)||(51456507-51456572)
chr4 (654-727)||(3037016-3037089)
chr4 (81-130)||(5473066-5473115)
chr4 (662-733)||(2571029-2571100)
chr4 (200-235)||(5472796-5472831)
chr4 (664-727)||(29585998-29586060)
chr4 (664-727)||(45291878-45291941)
chr4 (684-727)||(55091340-55091383)
chr4 (373-455)||(5449411-5449491)
chr4 (664-726)||(27407773-27407835)
chr4 (662-724)||(56297858-56297920)
chr4 (665-726)||(19903804-19903865)
chr4 (654-727)||(26125744-26125817)
chr4 (650-727)||(38416803-38416880)
chr4 (650-727)||(44232230-44232307)
chr4 (650-734)||(9029595-9029679)
chr4 (618-727)||(10550424-10550535)
chr4 (659-727)||(53241936-53242004)
chr4 (664-727)||(2760880-2760943)
chr4 (686-725)||(5119076-5119115)
chr4 (669-720)||(25633247-25633298)
chr4 (664-727)||(29830389-29830452)
chr4 (664-727)||(39307742-39307805)
chr4 (663-734)||(50815006-50815077)
chr4 (664-727)||(54330843-54330906)
chr4 (148-177)||(5473017-5473046)
chr4 (650-727)||(12625283-12625360)
chr4 (650-727)||(17610312-17610389)
chr4 (650-727)||(25296733-25296810)
chr4 (686-727)||(35381047-35381088)
chr4 (650-727)||(35686405-35686482)
chr4 (686-727)||(43967791-43967832)
chr4 (686-727)||(55209727-55209768)
[»] chr2 (23 HSPs)
chr2 (654-727)||(24251996-24252069)
chr2 (654-724)||(11931727-11931797)
chr2 (618-727)||(7799847-7799956)
chr2 (628-727)||(19165936-19166034)
chr2 (664-727)||(31610806-31610869)
chr2 (662-727)||(43444693-43444758)
chr2 (655-727)||(44563150-44563223)
chr2 (656-720)||(40618847-40618910)
chr2 (650-727)||(5405028-5405105)
chr2 (650-727)||(6223098-6223175)
chr2 (650-727)||(7608081-7608158)
chr2 (650-727)||(8042175-8042252)
chr2 (650-727)||(19141219-19141296)
chr2 (662-727)||(38291996-38292061)
chr2 (684-725)||(42133818-42133859)
chr2 (650-727)||(44365189-44365266)
chr2 (672-727)||(19262734-19262789)
chr2 (649-724)||(22839083-22839158)
chr2 (650-737)||(39358178-39358265)
chr2 (629-727)||(16865065-16865163)
chr2 (686-724)||(38839141-38839179)
chr2 (684-725)||(4137925-4137966)
chr2 (655-728)||(40609247-40609319)
[»] chr1 (21 HSPs)
chr1 (629-727)||(44647866-44647964)
chr1 (629-725)||(44644510-44644606)
chr1 (628-734)||(28030827-28030933)
chr1 (625-727)||(3485360-3485462)
chr1 (666-727)||(34634955-34635016)
chr1 (662-727)||(48375046-48375111)
chr1 (675-727)||(22575740-22575792)
chr1 (664-740)||(38153417-38153493)
chr1 (662-728)||(18512985-18513050)
chr1 (650-727)||(6402563-6402640)
chr1 (650-727)||(6766404-6766481)
chr1 (650-727)||(9342798-9342875)
chr1 (663-740)||(9881321-9881398)
chr1 (650-727)||(11641220-11641297)
chr1 (650-727)||(16120593-16120670)
chr1 (650-727)||(17305986-17306063)
chr1 (650-727)||(36757639-36757716)
chr1 (664-727)||(30385298-30385361)
chr1 (664-714)||(16689870-16689920)
chr1 (666-727)||(51021015-51021077)
chr1 (650-727)||(40977641-40977718)
[»] chr5 (22 HSPs)
chr5 (664-727)||(32017259-32017322)
chr5 (655-724)||(4671246-4671315)
chr5 (654-727)||(13812083-13812156)
chr5 (650-727)||(18094234-18094311)
chr5 (650-727)||(40156230-40156307)
chr5 (618-726)||(38916404-38916512)
chr5 (654-724)||(2825277-2825348)
chr5 (664-727)||(12007785-12007848)
chr5 (664-727)||(12456793-12456856)
chr5 (691-733)||(27579577-27579619)
chr5 (650-727)||(978109-978186)
chr5 (618-727)||(9502780-9502889)
chr5 (662-727)||(18998731-18998796)
chr5 (691-727)||(3422363-3422399)
chr5 (691-734)||(12359967-12360010)
chr5 (664-727)||(39776676-39776739)
chr5 (650-727)||(11251146-11251223)
chr5 (650-715)||(11785891-11785956)
chr5 (654-727)||(27109725-27109797)
chr5 (650-727)||(30355027-30355104)
chr5 (650-727)||(33387252-33387329)
chr5 (655-716)||(37495647-37495708)
[»] scaffold0225 (1 HSPs)
scaffold0225 (654-727)||(8986-9059)
[»] scaffold0029 (1 HSPs)
scaffold0029 (654-727)||(138183-138256)
[»] chr6 (19 HSPs)
chr6 (654-727)||(15337524-15337597)
chr6 (628-740)||(4440860-4440972)
chr6 (664-727)||(10298726-10298789)
chr6 (650-727)||(28477785-28477862)
chr6 (650-734)||(19240738-19240822)
chr6 (628-727)||(3623863-3623961)
chr6 (628-727)||(5495259-5495358)
chr6 (650-727)||(4147963-4148040)
chr6 (650-727)||(22054804-22054881)
chr6 (650-727)||(24624094-24624171)
chr6 (650-727)||(29693915-29693992)
chr6 (650-727)||(29790238-29790315)
chr6 (691-727)||(31869781-31869817)
chr6 (664-727)||(32414832-32414895)
chr6 (686-727)||(6563294-6563335)
chr6 (686-727)||(8101668-8101709)
chr6 (650-727)||(15383083-15383160)
chr6 (650-727)||(19088111-19088188)
chr6 (662-727)||(24955549-24955614)
[»] chr3 (23 HSPs)
chr3 (662-733)||(15664092-15664163)
chr3 (654-724)||(41751566-41751636)
chr3 (617-740)||(44561783-44561906)
chr3 (662-734)||(15568081-15568153)
chr3 (650-727)||(13499488-13499565)
chr3 (618-727)||(15332959-15333068)
chr3 (650-727)||(27334884-27334961)
chr3 (650-727)||(39866294-39866371)
chr3 (627-724)||(41252919-41253016)
chr3 (650-727)||(42490349-42490426)
chr3 (664-727)||(47164605-47164669)
chr3 (691-734)||(17643804-17643847)
chr3 (664-727)||(21005339-21005402)
chr3 (664-723)||(27813445-27813504)
chr3 (664-727)||(30213850-30213913)
chr3 (662-725)||(35507905-35507968)
chr3 (664-727)||(42761636-42761699)
chr3 (654-724)||(3017827-3017897)
chr3 (662-724)||(30057343-30057405)
chr3 (650-716)||(52167241-52167307)
chr3 (650-727)||(27010627-27010704)
chr3 (686-727)||(33415867-33415908)
chr3 (650-727)||(54507673-54507750)
[»] scaffold0262 (1 HSPs)
scaffold0262 (654-727)||(22816-22889)
[»] scaffold0608 (1 HSPs)
scaffold0608 (673-740)||(1575-1642)
[»] scaffold0595 (1 HSPs)
scaffold0595 (664-727)||(3994-4057)
[»] chr7 (25 HSPs)
chr7 (664-727)||(4131656-4131719)
chr7 (662-727)||(6766703-6766768)
chr7 (650-727)||(7438935-7439012)
chr7 (650-727)||(41898020-41898097)
chr7 (654-721)||(36515875-36515942)
chr7 (664-734)||(38851993-38852063)
chr7 (654-724)||(44594676-44594745)
chr7 (629-727)||(44732023-44732121)
chr7 (662-727)||(11502733-11502798)
chr7 (650-727)||(28061668-28061745)
chr7 (650-727)||(36623340-36623417)
chr7 (618-727)||(40090071-40090180)
chr7 (650-727)||(47156059-47156136)
chr7 (628-724)||(47525992-47526089)
chr7 (654-727)||(49101966-49102039)
chr7 (691-734)||(19120676-19120719)
chr7 (686-724)||(27045564-27045602)
chr7 (686-724)||(37467463-37467501)
chr7 (650-716)||(42662219-42662284)
chr7 (662-723)||(8683862-8683923)
chr7 (650-727)||(32431511-32431588)
chr7 (650-727)||(36585141-36585218)
chr7 (686-727)||(42890496-42890537)
chr7 (686-727)||(46103523-46103564)
chr7 (686-727)||(48602504-48602545)
[»] chr8 (17 HSPs)
chr8 (666-734)||(3370402-3370470)
chr8 (628-727)||(5173261-5173360)
chr8 (650-727)||(616815-616892)
chr8 (650-727)||(623208-623285)
chr8 (664-721)||(33700232-33700289)
chr8 (664-720)||(34327222-34327278)
chr8 (664-727)||(132063-132126)
chr8 (650-733)||(5878348-5878431)
chr8 (664-727)||(40494430-40494493)
chr8 (618-724)||(36167076-36167182)
chr8 (650-727)||(14237312-14237389)
chr8 (686-727)||(18035168-18035209)
chr8 (650-727)||(18044457-18044534)
chr8 (679-724)||(18090389-18090434)
chr8 (650-727)||(32998482-32998559)
chr8 (650-727)||(41263842-41263919)
chr8 (650-727)||(42587401-42587478)
[»] scaffold0009 (1 HSPs)
scaffold0009 (691-724)||(217031-217064)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 232 - 582
Target Start/End: Complemental strand, 5472574 - 5472223
Alignment:
Q  232 agagaatcctaattcagtttgatgcctaaggtgggacaatcaaaggttggtgtgataaattgtttgcaggttcgatctctactcttatcataatggtaag 331  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5472574 agagaatcctaattcagtttgatgcctaaggtggcacaatcaaaggttggtgtgataaattgtttgcaggttcgatctctactctcatcataatggtaag 5472475  T
Q  332 aattatttacaatgttaacattgacggtttcaaaaagtaataataaaaaatcatcattttgatgacaaatttatataattttttctctttagggtcgaac 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5472474 aattatttacaatgttaacattgacggtttcaaaaagtaataataaaaaatcatcattttgatgataaatttatataattttttctctttagggtcgaac 5472375  T
Q  432 tactcaactttattcaacccttagtttcaaaaattaatgcataagttcatata-tgtttttcaaaattttgcagattggtagggctgcccgtacaggcta 530  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  5472374 tactaaactttgttcaacccttagtttcaaaaattaaagcataagttcatatattttttttcaaaattttgcagattggttgggctgcccgtacaggcta 5472275  T
Q  531 ggctacaacacatgaccttgataatttgagtgttcaattcagagagcccaat 582  Q
     ||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  5472274 agctacaacacatggccttgataatttgagtgttcaattcagagagtccaat 5472223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 248 - 374
Target Start/End: Original strand, 5449253 - 5449379
Alignment:
Q  248 gtttgatgcctaaggtgggacaatcaaaggttggtgtgataaattgtttgcaggttcgatctctactcttatcataatggtaagaattatttacaatgtt 347  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||||||||    
T  5449253 gtttgatgactaaggtgggacaatcaaaggttggtgtgataaattgtttgcaagtttgatctctactctcatcataatggtaacaactatttacaatgtt 5449352  T
Q  348 aacattgacggtttcaaaaagtaataa 374  Q
    |||||||||||||||||||||||||||    
T  5449353 aacattgacggtttcaaaaagtaataa 5449379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 592 - 740
Target Start/End: Complemental strand, 5472239 - 5472091
Alignment:
Q  592 aattcagagagcccaatgttcagtattactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagt 691  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | || | |    
T  5472239 aattcagagagtccaatgttcagtattacttcctttgttctaaaatatatgctgcatatttgcaatatgtattattcacataatttaatttgaccacact 5472140  T
Q  692 ttttaattaatatataaatacaaatgttagcatgtatgatattcttcga 740  Q
    ||||||| |||||||||||||||||||||| ||||||||| || |||||    
T  5472139 ttttaatcaatatataaatacaaatgttagtatgtatgattttgttcga 5472091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 629 - 727
Target Start/End: Original strand, 38721348 - 38721446
Alignment:
Q  629 ttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||| |||  |||| ||| |||| |||||||||||||| ||||| ||| |||||| |||||||  ||||||||||||||||||||||||||||    
T  38721348 ttttaaaatacatgtcgcattttttcaatgtgtattattcacatgacttattttgatcatattttttaacaaatatataaatacaaatgttagcatgta 38721446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 7614651 - 7614724
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||| ||||| |||||| ||||| ||| | |||| ||||||| |||||||||||||||||||||||||||||    
T  7614651 caatatatattaatcacatgacttattttgaccatattttttaactaatatataaatacaaatgttagcatgta 7614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 628 - 716
Target Start/End: Original strand, 29051694 - 29051782
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaat 716  Q
    ||||||||||| ||| ||||  ||| ||||||  ||||||||||||||||| ||| | |||| ||||||| ||||||||||||||||||    
T  29051694 gttttaaaatacatgttgcaattttacaatatacattattcacataacttactttgaccatattttttaactaatatataaatacaaat 29051782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 628 - 740
Target Start/End: Complemental strand, 36523220 - 36523108
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||||||  |||| ||||||||||| | |||| |||| ||||| ||| |  ||| ||||||| |||||||||||||||||||||| ||||||    
T  36523220 gtttcaaaatatatgtcgcatttttgcaatatgcactatttacatgacttactttgactatactttttaactaatatataaatacaaatgttaacatgta 36523121  T
Q  728 tgatattcttcga 740  Q
     ||| || |||||    
T  36523120 agatgttgttcga 36523108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 673 - 740
Target Start/End: Original strand, 50181115 - 50181182
Alignment:
Q  673 aacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatattcttcga 740  Q
    |||||| ||| |||||| |||||||||||| ||||||||||||| |||||||||| |||||| |||||    
T  50181115 aacttactttaatcatattttttaattaatgtataaatacaaatattagcatgtaagatattgttcga 50181182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 727
Target Start/End: Complemental strand, 51456572 - 51456507
Alignment:
Q  661 tattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||| || ||| |||||| ||||||| |||||||||||||||||| ||||||||||    
T  51456572 tattattcacataacctactttcatcata-tttttaactaatatataaatacaaattttagcatgta 51456507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 3037016 - 3037089
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| |||| ||||||||| ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  3037016 caatgtgtactattcacatgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 3037089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 5473115 - 5473066
Alignment:
Q  81 taaagtgcatttaaagaaaaacaaagttttcaagtgtgttaggatgaaga 130  Q
    |||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  5473115 taaagtgcatttaaatcaaaacaaagttttcaagtgtgttaggataaaga 5473066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 662 - 733
Target Start/End: Complemental strand, 2571100 - 2571029
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatat 733  Q
    ||||||||||| | ||| ||| |  ||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  2571100 attattcacatgatttattttgactatattttttaactaatatataaatacaaatgttagcatgtaagatat 2571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 5472831 - 5472796
Alignment:
Q  200 aattcaattttgtcgtttaagctctattatttagag 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  5472831 aattcaattttgtcgtttaagctctattatttagag 5472796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 29586060 - 29585998
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||| ||| | |||| |||||||||||||| ||||||||||||||| ||||||    
T  29586060 tattcacataacttactttga-catattttttaattaatatgtaaatacaaatgttaacatgta 29585998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 45291878 - 45291941
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| |||||| ||||||| |||||||||||||||||| ||||||||||    
T  45291878 tattcacttgacttactttgatcatactttttaactaatatataaatacaaatattagcatgta 45291941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 684 - 727
Target Start/End: Complemental strand, 55091383 - 55091340
Alignment:
Q  684 atcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  55091383 atcatattttttaattaatatataaatacaaatgttagtatgta 55091340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 5449411 - 5449491
Alignment:
Q  373 aataaaaaatcatcattttgatgacaaatttatataattttttctctttagggtcgaactactcaactttattcaacccttag 455  Q
    |||||||||||| |||||  |||  ||||||||| ||| |||| |||||||||||||||||||||||||| |||| |||||||    
T  5449411 aataaaaaatcaacatttc-atggaaaatttatagaatatttt-tctttagggtcgaactactcaactttgttcatcccttag 5449491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 726
Target Start/End: Complemental strand, 27407835 - 27407773
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgt 726  Q
    ||||||||||||||| ||| | | || ||||||| |||||||||||||||||| |||||||||    
T  27407835 tattcacataacttactttgaccctactttttaactaatatataaatacaaatattagcatgt 27407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 724
Target Start/End: Complemental strand, 56297920 - 56297858
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||||||||||||  ||| | |||| || |||| ||||||||||||||||||||||||||    
T  56297920 attattcacataacttgttttgaccatatttattaactaatatataaatacaaatgttagcat 56297858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 726
Target Start/End: Complemental strand, 19903865 - 19903804
Alignment:
Q  665 attcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgt 726  Q
    |||||||||| ||| ||| | ||||  |||||| ||||||||||||||||||||||||||||    
T  19903865 attcacataatttactttgaccatatattttaactaatatataaatacaaatgttagcatgt 19903804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 26125744 - 26125817
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| ||||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  26125744 caatatgcattattcacttgacttactttgaccatattttttaactaatgtataaatacaaatattagcatgta 26125817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 38416880 - 38416803
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  38416880 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 38416803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 44232307 - 44232230
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  44232307 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 44232230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 650 - 734
Target Start/End: Complemental strand, 9029679 - 9029595
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    |||||||| |||| |||| || ||||||| ||| | |||| ||||||| |||| ||||||||||||| |||||| ||| ||||||    
T  9029679 tttgcaatctgtactatttacttaacttactttgaccatactttttaactaatgtataaatacaaatattagcacgtaagatatt 9029595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 727
Target Start/End: Original strand, 10550424 - 10550535
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcata--gtttttaattaatatataaatacaaa 715  Q
    |||||||| ||||||||||||| || ||||  ||| ||||||| | |||||||||   ||| ||| | ||||   ||||||| ||||||||||||| |||    
T  10550424 tactccctctgttttaaaatatctgttgcaattttacaatatgcactattcacatggtttactttaaccatattttttttaactaatatataaataaaaa 10550523  T
Q  716 tgttagcatgta 727  Q
    ||||||||||||    
T  10550524 tgttagcatgta 10550535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 727
Target Start/End: Complemental strand, 53242004 - 53241936
Alignment:
Q  659 tgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||||||| ||| ||| ||  || |||||||||||| |||||||||| |||||||||||||    
T  53242004 tgtactattcacataatttattttaattttattttttaattaatttataaatacatatgttagcatgta 53241936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 2760943 - 2760880
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  2760943 tattcacttgacttactttgaccatattttttaactaatatataaatacaaatattagcatgta 2760880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 725
Target Start/End: Complemental strand, 5119115 - 5119076
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatg 725  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  5119115 catattttttaattaatatataaatacaaatgttaacatg 5119076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 720
Target Start/End: Original strand, 25633247 - 25633298
Alignment:
Q  669 acataacttaattttatcatagtttttaattaatatataaatacaaatgtta 720  Q
    |||||| ||| ||| | |||| ||||||||||||||||||||||||||||||    
T  25633247 acataatttactttaaccatattttttaattaatatataaatacaaatgtta 25633298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 29830389 - 29830452
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  29830389 tattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 29830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 39307742 - 39307805
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||| ||||| ||| ||  || ||||||| ||||||||||||||||||||||| |||||    
T  39307742 tattcacatgacttactttgatgctactttttaactaatatataaatacaaatgttagtatgta 39307805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 734
Target Start/End: Original strand, 50815006 - 50815077
Alignment:
Q  663 ttattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    |||||||||||||||| ||| ||  || ||||||| | |||||||||||||||| ||| | |||||||||||    
T  50815006 ttattcacataacttactttgattttattttttaacttatatataaatacaaatattaacgtgtatgatatt 50815077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 54330906 - 54330843
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  54330906 tattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 54330843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 5473046 - 5473017
Alignment:
Q  148 atgatgtaatttcaaaggaaaataattcaa 177  Q
    ||||||||||||||||||||||||||||||    
T  5473046 atgatgtaatttcaaaggaaaataattcaa 5473017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 12625283 - 12625360
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| | ||||||  | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  12625283 tttgcaatatgcactattcatctgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 12625360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 17610312 - 17610389
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| | ||||||| | ||||| ||| | |||| ||||||  |||| ||||||||||||| ||||||||||    
T  17610312 tttgcaatatgcactattcacttgacttactttgaccatattttttagctaatgtataaatacaaatattagcatgta 17610389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 25296810 - 25296733
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  25296810 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 25296733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Complemental strand, 35381088 - 35381047
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  35381088 catactttttaactaatatataaatacaaatattagcatgta 35381047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 35686405 - 35686482
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| ||||||| ||| | |||| ||||||| |||| ||||||||||||| ||| ||||||    
T  35686405 tttgcaatgtgcactattcacttaacttactttgaccatactttttaactaatgtataaatacaaatattatcatgta 35686482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 43967791 - 43967832
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  43967791 catactttttaactaatatataaatacaaatattagcatgta 43967832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Complemental strand, 55209768 - 55209727
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  55209768 catactttttaactaatatataaatacaaatattagcatgta 55209727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 24251996 - 24252069
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||||||||||||| ||| | |||| ||||||| |||||||||||||||||||||||||||||    
T  24251996 caatatgtattattcacataacttattttgaccatattttttaactaatatataaatacaaatgttagcatgta 24252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 654 - 724
Target Start/End: Original strand, 11931727 - 11931797
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||| |||||||| |||||||| ||| | |||| ||||||| ||||||||||||||||||||||||||    
T  11931727 caatatgcattattcatataacttactttgaccatattttttaactaatatataaatacaaatgttagcat 11931797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 727
Target Start/End: Original strand, 7799847 - 7799956
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatg 717  Q
    ||||||||  |||| |||||| |||  |||| |||||||| || | ||||||||| ||||| ||| | | || ||||||| |||||||||||||||||||    
T  7799847 tactccctacgtttcaaaatacatgtcgcatttttgcaatgtgcactattcacatgacttactttgaccctactttttaactaatatataaatacaaatg 7799946  T
Q  718 ttagcatgta 727  Q
    ||||||||||    
T  7799947 ttagcatgta 7799956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 727
Target Start/End: Complemental strand, 19166034 - 19165936
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||||||||  || | |||||||| || || |||||||| ||||  ||| ||||| ||||||||||||||||||||||||| ||||| ||||||    
T  19166034 gttttaaaatatatgtcgcgtttttgcaatgtgcat-attcacatgacttgttttgatcatggtttttaattaatatataaatacaattgttatcatgta 19165936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 31610869 - 31610806
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||| ||||| |||  ||||||| ||||||||||||||||||||||| |||||    
T  31610869 tattcacataacttatttttaccattttttttaactaatatataaatacaaatgttagaatgta 31610806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 43444758 - 43444693
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||| ||  ||| | |||| ||||||| |||||||||||||||||||||||||||||    
T  43444758 attattcacataattttctttgaccatattttttaactaatatataaatacaaatgttagcatgta 43444693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 655 - 727
Target Start/End: Complemental strand, 44563223 - 44563150
Alignment:
Q  655 aatatgtattattcacataacttaattttatcatagttttt-aattaatatataaatacaaatgttagcatgta 727  Q
    |||||| | |||||| |||||||| ||| |||||| ||||| |||||||||||||||||| |||||||||||||    
T  44563223 aatatgcactattcatataacttactttgatcatatttttttaattaatatataaatacatatgttagcatgta 44563150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 720
Target Start/End: Original strand, 40618847 - 40618910
Alignment:
Q  656 atatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgtta 720  Q
    ||||| |||||| | |||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  40618847 atatgcattattaatataacttaatttaatcatattttttaa-taatatataaatacaaatgtta 40618910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 5405028 - 5405105
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  5405028 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 5405105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 6223098 - 6223175
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  6223098 tttgcaatgtgcactattcacttgacttactttgaccatattttttaactaatatataaatacaaatattagcatgta 6223175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 7608081 - 7608158
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  7608081 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 7608158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 8042252 - 8042175
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  8042252 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 8042175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 19141296 - 19141219
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  19141296 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 19141219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 38291996 - 38292061
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| |||||||| ||| | |||| ||||||| || ||||||||||||||||||| ||||||    
T  38291996 attattcagataacttactttgaccatattttttaactagtatataaatacaaatgttaacatgta 38292061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 725
Target Start/End: Original strand, 42133818 - 42133859
Alignment:
Q  684 atcatagtttttaattaatatataaatacaaatgttagcatg 725  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  42133818 atcatattttttaactaatatataaatacaaatgttagcatg 42133859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 44365189 - 44365266
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  44365189 tttgcaatatgcactattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 44365266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 727
Target Start/End: Original strand, 19262734 - 19262789
Alignment:
Q  672 taacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  19262734 taacttactttgaccatattttttaactaatatataaatacaaatattagcatgta 19262789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 724
Target Start/End: Complemental strand, 22839158 - 22839083
Alignment:
Q  649 atttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||||| || | ||||||||||||||| ||| | |||| ||||||| || |||||||||  ||||||||||||    
T  22839158 atttgcaatgtgcactattcacataacttactttgaccatattttttaactagtatataaattaaaatgttagcat 22839083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 737
Target Start/End: Original strand, 39358178 - 39358265
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatattctt 737  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| |||||||||| ||| |||||    
T  39358178 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgtaagatgttctt 39358265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 727
Target Start/End: Original strand, 16865065 - 16865163
Alignment:
Q  629 ttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||| |||  |||| ||| ||||||  | |||||| || ||||| ||| |  ||| ||||||| ||| |||||||||||||||||||||||||    
T  16865065 ttttaaaatacatgtcgcatttttacaatatacaatattcatatgacttactttgacgatactttttaactaacatataaatacaaatgttagcatgta 16865163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 724
Target Start/End: Original strand, 38839141 - 38839179
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  38839141 catattttttaactaatatataaatacaaatgttagcat 38839179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 725
Target Start/End: Complemental strand, 4137966 - 4137925
Alignment:
Q  684 atcatagtttttaattaatatataaatacaaatgttagcatg 725  Q
    |||||| ||||||||||| ||| |||||||||||||||||||    
T  4137966 atcatattttttaattaacatacaaatacaaatgttagcatg 4137925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 728
Target Start/End: Complemental strand, 40609319 - 40609247
Alignment:
Q  655 aatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtat 728  Q
    |||||| |||||| || ||||||| ||| |||||| ||||||| |||||||||||||||  ||||| |||||||    
T  40609319 aatatgaattatttacgtaacttactttgatcata-tttttaactaatatataaatacagttgttaacatgtat 40609247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 629 - 727
Target Start/End: Complemental strand, 44647964 - 44647866
Alignment:
Q  629 ttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||| |||  |||| ||| |||| |||||||||||||| ||||| ||| |||||| |||||||  ||||||||||||||||||||||||||||    
T  44647964 ttttaaaatacatgtcgcattttttcaatgtgtattattcacatgacttattttgatcatattttttaacaaatatataaatacaaatgttagcatgta 44647866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 629 - 725
Target Start/End: Complemental strand, 44644606 - 44644510
Alignment:
Q  629 ttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatg 725  Q
    |||||||||| |||  |||| ||| |||| |||||||||||||| ||||| ||| |||||| |||||||  ||||||||||||||||||||||||||    
T  44644606 ttttaaaatacatgtcgcattttttcaatgtgtattattcacatgacttactttgatcatattttttaacaaatatataaatacaaatgttagcatg 44644510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 628 - 734
Target Start/End: Complemental strand, 28030933 - 28030827
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| |||||| ||| ||||| |||||||| || |||||| |||| ||||| ||| | |||| ||||||| ||| |||||||||||||||||||||||||    
T  28030933 gtttcaaaatacatgttgcatttttgcaatgtgcattatttacatgacttattttgaccatactttttaactaacatataaatacaaatgttagcatgta 28030834  T
Q  728 tgatatt 734  Q
     ||||||    
T  28030833 agatatt 28030827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 727
Target Start/End: Complemental strand, 3485462 - 3485360
Alignment:
Q  625 tttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||||||||||||| |||  | |  ||| ||||||| | ||||| ||||||||| ||| |||||| ||||||| |||||||||||||||||||||| |||    
T  3485462 tttgttttaaaatacatgtcgtaattttacaatatgcactattcgcataacttactttgatcatattttttaactaatatataaatacaaatgttatcat 3485363  T
Q  725 gta 727  Q
    |||    
T  3485362 gta 3485360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 666 - 727
Target Start/End: Original strand, 34634955 - 34635016
Alignment:
Q  666 ttcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||| ||| || ||| ||||||| |||||||||||||||||||||| ||||||    
T  34634955 ttcacataacttattttgataatattttttaactaatatataaatacaaatgttaacatgta 34635016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 48375046 - 48375111
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||| ||||||| ||| |||||| ||||||| |||| ||||||||||||| ||||||||||    
T  48375046 attattcacttaacttattttgatcatattttttaactaatttataaatacaaatattagcatgta 48375111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 727
Target Start/End: Complemental strand, 22575792 - 22575740
Alignment:
Q  675 cttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  22575792 cttactttcatcatattttttaactaatatataaatacaaatgttagcatgta 22575740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 740
Target Start/End: Complemental strand, 38153493 - 38153417
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatattcttcga 740  Q
    ||||||||| ||||| | ||| |||| ||||||| ||| |||||||||||||||||| |||||| ||| ||||||||    
T  38153493 tattcacatgacttactgttaccatactttttaactaacatataaatacaaatgttatcatgtaagatgttcttcga 38153417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 18512985 - 18513050
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtat 728  Q
    ||||||||||||| ||| ||| |||||| ||||||||| |||||||| || ||||||||||||||||    
T  18512985 attattcacataatttattttgatcata-tttttaattgatatataagtataaatgttagcatgtat 18513050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 6402640 - 6402563
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  6402640 tttgcaatgtgcactattcacttgacttattttgaccatactttttaactaatatataaatacaaatattagcatgta 6402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 6766404 - 6766481
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  6766404 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 6766481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 9342875 - 9342798
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| ||  |||||||| | ||||| ||| |||||| ||||||| |||| ||||||||||||| ||||||||||    
T  9342875 tttgcaatgtgcgttattcacttgacttactttgatcatattttttaactaatgtataaatacaaatattagcatgta 9342798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 740
Target Start/End: Original strand, 9881321 - 9881398
Alignment:
Q  663 ttattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatattcttcga 740  Q
    |||||||||||||||| ||| | |||| ||||||| ||||||||| ||| |||||||| |||||| ||| || |||||    
T  9881321 ttattcacataacttattttaaccataatttttaactaatatatacatataaatgttatcatgtaagatgttgttcga 9881398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 11641297 - 11641220
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  11641297 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 11641220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 16120670 - 16120593
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || ||||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  16120670 tttgcaatgtgcattattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 16120593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 17305986 - 17306063
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| |  ||| |||||||||||||||||||||||||| ||||||||||    
T  17305986 tttgcaatgtgcactattcacttgacttactttgactatactttttaattaatatataaatacaaatattagcatgta 17306063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 36757716 - 36757639
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  36757716 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 36757639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 30385361 - 30385298
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||  ||| ||| | |||| ||||||| ||||||||||||||||||||||| |||||    
T  30385361 tattcacatagtttactttgaccatattttttaactaatatataaatacaaatgttagtatgta 30385298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 714
Target Start/End: Original strand, 16689870 - 16689920
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaa 714  Q
    ||||||||||||||| ||| |||||| ||| ||| ||||||||||||||||    
T  16689870 tattcacataacttactttgatcatattttctaactaatatataaatacaa 16689920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 666 - 727
Target Start/End: Complemental strand, 51021077 - 51021015
Alignment:
Q  666 ttcacataacttaattttatcatagtttttaattaatatataaat-acaaatgttagcatgta 727  Q
    ||||||| ||||||||| |||||| ||||||| ||||||||||   |||||||||||||||||    
T  51021077 ttcacattacttaatttgatcatattttttaactaatatataatgcacaaatgttagcatgta 51021015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 40977718 - 40977641
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| |||| ||||||| | ||| | ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  40977718 tttgcaatgtgtactattcacttgactaactttgaccatactttttaactaatgtataaatacaaatattagcatgta 40977641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 32017259 - 32017322
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  32017259 tattcacataacttactttgatcatattttttaactaatatataaatacaaatgttagcatgta 32017322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 655 - 724
Target Start/End: Original strand, 4671246 - 4671315
Alignment:
Q  655 aatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||||||||||||||||||||||| |||  ||||| ||||||| | ||||||||||||||||| ||||||    
T  4671246 aatatgtattattcacataacttactttgttcatattttttaactgatatataaatacaaatgatagcat 4671315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 13812083 - 13812156
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||||| |||||||| ||||||||| |||| |||||    
T  13812083 caatatgtattattcacataatttattttaatcatattttttaactaatatatcaatacaaatattagtatgta 13812156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 18094311 - 18094234
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || ||||||||| ||||||| ||| || ||| ||||||| |||| ||||||||||||| ||||||||||    
T  18094311 tttgcaatgtgcattattcacttaacttactttaattatactttttaactaatgtataaatacaaatattagcatgta 18094234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 40156230 - 40156307
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||||| |||| |||||||||||| ||||||||||||| ||||||||||    
T  40156230 tttgcaatgtgcactattcacttgacttacttttaccataatttttaattaatgtataaatacaaatattagcatgta 40156307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 726
Target Start/End: Complemental strand, 38916512 - 38916404
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatg 717  Q
    ||||||||  |||| |||||| |||  |||| |||||| |||| | ||||||||| ||||  ||| | |||| ||||||| ||| |||||||||||||||    
T  38916512 tactccctccgtttcaaaatacatgtcgcatttttgcagtatgcactattcacatgacttgctttgaccatactttttaactaacatataaatacaaatg 38916413  T
Q  718 ttagcatgt 726  Q
    |||||||||    
T  38916412 ttagcatgt 38916404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 724
Target Start/End: Complemental strand, 2825348 - 2825277
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagt-ttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||| ||||||||||||||||| ||| || ||| | |||| ||||||||||||||| ||||||||||||    
T  2825348 caatatgcattattcacataacttactttgataatattattttcattaatatataaatagaaatgttagcat 2825277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 12007848 - 12007785
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| |||| ||||||||| | | || ||||||||||||||||||||||||||| |||||||||    
T  12007848 tatttacatgacttaatttgaccctactttttaattaatatataaatacaaatgctagcatgta 12007785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 12456856 - 12456793
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| |||||||||| ||| |||||| ||||||| ||||||| ||||||||||||||| |||||    
T  12456856 tatttacataacttactttaatcatattttttaactaatatacaaatacaaatgttagtatgta 12456793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 733
Target Start/End: Complemental strand, 27579619 - 27579577
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcatgtatgatat 733  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  27579619 tttttaactaatatataaatacaaatgttagcatgtaagatat 27579577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 978109 - 978186
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  978109 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 978186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 727
Target Start/End: Complemental strand, 9502889 - 9502780
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatg 717  Q
    ||||||||  ||||||||||| ||| |  || |||||||| || | ||||||  | ||||| ||| | |||| ||||||| ||||||||||||||||||     
T  9502889 tactccctccgttttaaaatacatgtttaatttttgcaatgtgcactattcatttgacttactttgaccatactttttaactaatatataaatacaaata 9502790  T
Q  718 ttagcatgta 727  Q
    ||||||||||    
T  9502789 ttagcatgta 9502780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 18998731 - 18998796
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||  ||| ||| | |||| ||||||| ||||||||||||||||||||||| |||||    
T  18998731 attattcacatagtttactttaaccatattttttaactaatatataaatacaaatgttagtatgta 18998796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 691 - 727
Target Start/End: Complemental strand, 3422399 - 3422363
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3422399 tttttaactaatatataaatacaaatgttagcatgta 3422363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 734
Target Start/End: Complemental strand, 12360010 - 12359967
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||    
T  12360010 tttttaactaatatataaatacaaatgttagcatgaaagatatt 12359967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 39776676 - 39776739
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||| ||| | | || ||||||| ||| |||||||||||||| ||||||||||    
T  39776676 tattcacataacttattttgaccgtactttttaactaacatataaatacaaatattagcatgta 39776739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 11251146 - 11251223
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  11251146 tttgcaatgtgcactattcacttgacttattttgaccatactttttaactaatgtataaatacaaatattagcatgta 11251223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 715
Target Start/End: Complemental strand, 11785956 - 11785891
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaa 715  Q
    |||||||| |||| ||||||| | ||||| ||| |||||| ||||||| |||| ||||||||||||    
T  11785956 tttgcaatgtgtactattcacttgacttactttgatcatactttttaactaatgtataaatacaaa 11785891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 27109725 - 27109797
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||||  | ||||| ||| || ||| |||||||||||| || |||||||||| ||||||||||    
T  27109725 caatatgtattattcatttgacttactttgat-atactttttaattaatgtaaaaatacaaatattagcatgta 27109797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 30355104 - 30355027
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| | ||||||| | | ||| ||| | ||||  |||||| |||||||||||||||||| ||||||||||    
T  30355104 tttgcaatatgcactattcacttgatttactttaaccatacattttaactaatatataaatacaaatattagcatgta 30355027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 33387252 - 33387329
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| |  ||| ||||||| |||||||||||||||||| ||||||||||    
T  33387252 tttgcaatgtgcactattcacttgacttactttgactatactttttaactaatatataaatacaaatattagcatgta 33387329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 716
Target Start/End: Original strand, 37495647 - 37495708
Alignment:
Q  655 aatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaat 716  Q
    |||||| | ||||| |||| |||| ||| |||||| ||||||| ||||||||||||||||||    
T  37495647 aatatgcactattctcatatcttactttgatcatattttttaactaatatataaatacaaat 37495708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 654 - 727
Target Start/End: Complemental strand, 9059 - 8986
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| ||||||||||||||||| ||| | || | ||||||| |||||||||||||||||||||||||||||    
T  9059 caatatgcattattcacataacttactttgaccacattttttaactaatatataaatacaaatgttagcatgta 8986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 654 - 727
Target Start/End: Complemental strand, 138256 - 138183
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| ||||||||||||||||| ||| | || | ||||||| |||||||||||||||||||||||||||||    
T  138256 caatatgcattattcacataacttactttgaccacattttttaactaatatataaatacaaatgttagcatgta 138183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 15337524 - 15337597
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| ||||||||||||||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  15337524 caatatgcattattcacataacttactttgaccatattttttaactaatatataaatacaaatattagcatgta 15337597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 628 - 740
Target Start/End: Original strand, 4440860 - 4440972
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| |||||||||| ||||| |||| ||| || | |||||| |||||||| ||| | |||| ||||||  ||| |||||||||||||||||||||||||    
T  4440860 gtttcaaaatatatgttgcatttttgtaatgtgcactattcatataacttactttgaccatactttttaggtaacatataaatacaaatgttagcatgta 4440959  T
Q  728 tgatattcttcga 740  Q
     ||| || |||||    
T  4440960 agatgttgttcga 4440972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 10298789 - 10298726
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||| |||||||| | |||| ||||| | |||||||||||||||||||||||||||||    
T  10298789 tattcacatagcttaatttgaccatattttttcactaatatataaatacaaatgttagcatgta 10298726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 28477785 - 28477862
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| |||| ||||||||| ||||  ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  28477785 tttgcaatgtgtactattcacatgacttgctttgaccataatttttaactaatatataaatacaaatattagcatgta 28477862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 650 - 734
Target Start/End: Complemental strand, 19240822 - 19240738
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    |||||||| | || ||||||||||||||| ||| | |||| ||||||| |||||||||||||||||| || ||| ||| ||||||    
T  19240822 tttgcaatgtatactattcacataacttattttgaccatattttttaactaatatataaatacaaatatttgcaagtaagatatt 19240738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 727
Target Start/End: Complemental strand, 3623961 - 3623863
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||||||||  |||  ||| ||||||  |||||||| |||  ||| ||| | |||| ||||||| |||||||||||||||||||||||||||||    
T  3623961 gttttaaaatatatgtcgcagttttacaatatacattattcatatagtttactttgaccata-tttttaactaatatataaatacaaatgttagcatgta 3623863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 727
Target Start/End: Original strand, 5495259 - 5495358
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||||||||  |||  ||| | || || |||||| |||||  ||| ||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  5495259 gttttaaaatatatgtcgcaattttacgatgtgcattatttacatagtttattttgatcatgttttttaactaatatataaatacaaatgttagcatgta 5495358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 4147963 - 4148040
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || ||||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  4147963 tttgcaatgtgcattattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 4148040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 22054804 - 22054881
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  22054804 tttgcaatatgcactattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 22054881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 24624171 - 24624094
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  24624171 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 24624094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 29693915 - 29693992
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| |||| ||||||||| ||||  ||| | |||| ||||||| ||||||||||||||||||  |||||||||    
T  29693915 tttgcaatgtgtactattcacatgacttgctttgaccataatttttaactaatatataaatacaaatactagcatgta 29693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 29790238 - 29790315
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| | || ||||||||| ||||| ||  | |||| ||||||| |||||||||||||||||| ||||||||||    
T  29790238 tttgcaatgtatactattcacatgacttacttggaccataatttttaactaatatataaatacaaatattagcatgta 29790315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 691 - 727
Target Start/End: Original strand, 31869781 - 31869817
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| |||||||||||||||||||||||||||||    
T  31869781 tttttaactaatatataaatacaaatgttagcatgta 31869817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 32414895 - 32414832
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  32414895 tattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 32414832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 6563294 - 6563335
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  6563294 catactttttaactaatatataaatacaaatattagcatgta 6563335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 8101668 - 8101709
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||||||| ||||||    
T  8101668 catattttttaactaatatataaatacaaatgttaacatgta 8101709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 15383160 - 15383083
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || ||||||||  | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  15383160 tttgcaatgtgcattattcatttgacttactttaaccatactttttaactaatctataaatacaaatattagcatgta 15383083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 19088188 - 19088111
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | || | ||||||| |||||||||||||||||| ||||||||||    
T  19088188 tttgcaatgtgcactattcacttgacttactttgaccaaactttttaactaatatataaatacaaatattagcatgta 19088111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 24955614 - 24955549
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||| | ||||| ||| |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  24955614 attattcacttgacttattttgatcatattttttaactaatgaataaatacaaatattagcatgta 24955549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 662 - 733
Target Start/End: Complemental strand, 15664163 - 15664092
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatat 733  Q
    |||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  15664163 attatttacatagcttaatttgatcatattttttaattaatatataaatacaaatgttactatgtaagatat 15664092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 654 - 724
Target Start/End: Complemental strand, 41751636 - 41751566
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||||| |||| ||||||| || ||| |||||| ||||||| ||||||||||||||||||||||||||    
T  41751636 caatatgtaatatttacataacatactttgatcatattttttaactaatatataaatacaaatgttagcat 41751566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 740
Target Start/End: Original strand, 44561783 - 44561906
Alignment:
Q  617 ttactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaat 716  Q
    ||||||| || |||| |||||| ||| ||||| |||||||| || | ||||||||| ||||| ||| | |||| ||||||| ||| ||||||||||||||    
T  44561783 ttactcctttcgtttcaaaatacatgttgcatgtttgcaatgtgcactattcacatgacttactttgaccatactttttaactaacatataaatacaaat 44561882  T
Q  717 gttagcatgtatgatattcttcga 740  Q
    |||  |||||| ||| || |||||    
T  44561883 gttgacatgtaagatgttgttcga 44561906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 662 - 734
Target Start/End: Complemental strand, 15568153 - 15568081
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    |||||| |||||  ||||||| |||||| ||||||| |||||||||||||||||||||| | |||| ||||||    
T  15568153 attatttacatagtttaatttgatcatattttttaactaatatataaatacaaatgttaccgtgtaagatatt 15568081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 13499565 - 13499488
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  13499565 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 13499488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 727
Target Start/End: Complemental strand, 15333068 - 15332959
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatg 717  Q
    |||||| | |||||||||||| |||  |||  ||| |||| || | |||||||||| |||  ||| | || | ||||||| |||||||||||||||||||    
T  15333068 tactccttctgttttaaaatacatgtcgcaattttacaatgtgcactattcacatagcttgctttgaccaaattttttaactaatatataaatacaaatg 15332969  T
Q  718 ttagcatgta 727  Q
    ||||||||||    
T  15332968 ttagcatgta 15332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 27334961 - 27334884
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  27334961 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 27334884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 39866371 - 39866294
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  39866371 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 39866294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 724
Target Start/End: Complemental strand, 41253016 - 41252919
Alignment:
Q  627 tgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||| ||||||||||  |||  ||| |||| || | |||||| ||| |||| ||| | |||| ||||||| ||||||||||||||||||||||||||    
T  41253016 tgtttcaaaatatatgtcgcaattttacaatgtgcactattcatatagcttactttaaccatattttttaactaatatataaatacaaatgttagcat 41252919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 42490426 - 42490349
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  42490426 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 42490349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 47164669 - 47164605
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatat-aaatacaaatgttagcatgta 727  Q
    |||| |||||||||| ||| |||||| ||||||| |||||||| ||||||||||||||| |||||    
T  47164669 tatttacataacttactttaatcatattttttaactaatatataaaatacaaatgttagtatgta 47164605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 734
Target Start/End: Original strand, 17643804 - 17643847
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||    
T  17643804 tttttaactaatatgtaaatacaaatgttagcatgtaagatatt 17643847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 21005339 - 21005402
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||||||||||||||||| |||| ||||||||||    
T  21005339 tattcacttcacttactttgaccatactttttaattaatatataaatataaatattagcatgta 21005402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 723
Target Start/End: Complemental strand, 27813504 - 27813445
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagca 723  Q
    |||||||||| |||| ||| |  ||| ||||||| |||||||||||||||||||||||||    
T  27813504 tattcacatagcttattttgactatattttttaactaatatataaatacaaatgttagca 27813445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 30213850 - 30213913
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  30213850 tattcacttgacttattttgaccatactttttaactaatatataaatacaaatattagcatgta 30213913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 725
Target Start/End: Original strand, 35507905 - 35507968
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatg 725  Q
    ||||||||||||||||| ||| |||||| | ||| |||||| |||||| |||||| ||||||||    
T  35507905 attattcacataacttattttaatcatactattttattaatttataaagacaaatattagcatg 35507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 42761699 - 42761636
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  42761699 tattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 42761636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 724
Target Start/End: Original strand, 3017827 - 3017897
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||| | |||| |||||||||  ||| | |||| ||||||| || |||||||||||||||||||||||    
T  3017827 caatatgaactattaacataacttgttttgaccatattttttaactattatataaatacaaatgttagcat 3017897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 724
Target Start/End: Original strand, 30057343 - 30057405
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||||||||||||| || ||| | |||| ||||||| |||||||||||  |||||||||||||    
T  30057343 attattcacataacatactttaaccatattttttaactaatatataaaagcaaatgttagcat 30057405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 716
Target Start/End: Original strand, 52167241 - 52167307
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaat 716  Q
    |||| ||| ||||||||||| || ||||  ||| | |||| ||||||||||||||||||||||||||    
T  52167241 tttgtaatgtgtattattcatatgacttcttttgaccatactttttaattaatatataaatacaaat 52167307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 27010704 - 27010627
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | || | ||||||| |||||||||||||||||| ||||||||||    
T  27010704 tttgcaatgtgcactattcacttgacttactttgaccaaactttttaactaatatataaatacaaatattagcatgta 27010627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 33415867 - 33415908
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  33415867 catactttttaactaatatataaatacaaatattagcatgta 33415908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 54507673 - 54507750
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| | ||||||| | ||||| ||| || ||| ||||||| |||| |||||||||| || ||||||||||    
T  54507673 tttgcaatatgcactattcacttgacttattttgattatactttttaactaatgtataaatacagatattagcatgta 54507750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 654 - 727
Target Start/End: Original strand, 22816 - 22889
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| ||||||||||||||||| ||| | || | ||||||| | |||||||||||||||||||||||||||    
T  22816 caatatgcattattcacataacttattttgaccacattttttaactcatatataaatacaaatgttagcatgta 22889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 673 - 740
Target Start/End: Original strand, 1575 - 1642
Alignment:
Q  673 aacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatattcttcga 740  Q
    |||||| ||| |||||| |||||||||||| ||||||||||||| |||||||||| |||||| |||||    
T  1575 aacttactttaatcatattttttaattaatgtataaatacaaatattagcatgtaagatattgttcga 1642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 3994 - 4057
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||| |||| ||| | |||| ||||||| |||||||||||||||||||||||||||||    
T  3994 tattcacatagcttactttgaccatattttttaactaatatataaatacaaatgttagcatgta 4057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 4131719 - 4131656
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||| ||| | |||| ||||||| ||||||||||||||||| |||||||||||    
T  4131719 tattcacataacttactttaaccatattttttaactaatatataaatacaaaagttagcatgta 4131656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 6766768 - 6766703
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||||||| ||| | |||| ||||||| |||| ||||||| ||||||||||||||||    
T  6766768 attattcacataacttattttgaccatattttttaactaatgtataaatgcaaatgttagcatgta 6766703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 7438935 - 7439012
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||| ||||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  7438935 tttgcaatatgcattattcacttgacttattttgaccatactttttaactaatgtataaatacaaatattagcatgta 7439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 41898020 - 41898097
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| |||||| ||||||| |||||||||||||||||| ||||||||||    
T  41898020 tttgcaatgtgcactattcacttgacttactttgatcatactttttaactaatatataaatacaaatattagcatgta 41898097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 721
Target Start/End: Original strand, 36515875 - 36515942
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttag 721  Q
    |||| |||| |||||||| |||||| ||| | |||| |||||||| ||||||||||||||||||||||    
T  36515875 caatgtgtactattcacacaacttactttaaccatattttttaatcaatatataaatacaaatgttag 36515942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 734
Target Start/End: Complemental strand, 38852063 - 38851993
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| |||||||||| ||||||    
T  38852063 tattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgtaagatatt 38851993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 724
Target Start/End: Complemental strand, 44594745 - 44594676
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||| || |||||||||| ||| ||| |||||| ||||||| |||||||||||||| |||||||||||    
T  44594745 caatatgcatcattcacataatttagtttaatcatattttttaactaatatataaatac-aatgttagcat 44594676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 727
Target Start/End: Original strand, 44732023 - 44732121
Alignment:
Q  629 ttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||||| ||| |  || |||||||| || | ||||||| | ||||| ||| |||||| ||||||| |||| ||||||||||||| ||||||||||    
T  44732023 ttttaaaatacatgttcaatttttgcaatgtgcactattcacttgacttactttgatcatactttttaactaatgtataaatacaaatattagcatgta 44732121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 11502798 - 11502733
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||| || ||||||| ||| |||||| ||||||| |||| ||||||||||||| ||||||||||    
T  11502798 attattgacttaacttactttgatcatactttttaactaatgtataaatacaaatattagcatgta 11502733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 28061745 - 28061668
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  28061745 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 28061668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 36623340 - 36623417
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  36623340 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 36623417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 727
Target Start/End: Complemental strand, 40090180 - 40090071
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatg 717  Q
    ||||||||  |||||||||||||||    || ||| |||| || | ||||||| | ||||| ||| | |||| ||||||| ||||||||||||||||||     
T  40090180 tactccctccgttttaaaatatatgtccaattttttcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaata 40090081  T
Q  718 ttagcatgta 727  Q
    ||||||||||    
T  40090080 ttagcatgta 40090071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 47156059 - 47156136
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  47156059 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 47156136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 724
Target Start/End: Complemental strand, 47526089 - 47525992
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagttttt-aattaatatataaatacaaatgttagcat 724  Q
    |||||||||||||||  |||  ||| || |||| |||||| || || |||| ||| |||||| ||||| || ||||||||||||||||||||||||||    
T  47526089 gttttaaaatatatgtcgcaattttacattatgcattatttacctagcttactttgatcatatttttttaactaatatataaatacaaatgttagcat 47525992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 727
Target Start/End: Complemental strand, 49102039 - 49101966
Alignment:
Q  654 caatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | |||||| |||||||| |||| ||||| ||||||| ||||| |||||||||||| || |||||||    
T  49102039 caatatgcactattcatataacttatttttgtcatattttttaactaatacataaatacaaatttttgcatgta 49101966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 734
Target Start/End: Complemental strand, 19120719 - 19120676
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||    
T  19120719 tttttaattaatatataaatataaatattagcatgtaagatatt 19120676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 724
Target Start/End: Complemental strand, 27045602 - 27045564
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  27045602 catattttttaactaatatataaatacaaatgttagcat 27045564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 724
Target Start/End: Complemental strand, 37467501 - 37467463
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  37467501 catattttttaactaatatataaatacaaatgttagcat 37467463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 716
Target Start/End: Original strand, 42662219 - 42662284
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaat 716  Q
    |||||||| ||||||||||||||  |||| ||| | |||| ||||||| ||||||||||||||||||    
T  42662219 tttgcaatgtgtattattcacatt-cttactttgaccatactttttaactaatatataaatacaaat 42662284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 723
Target Start/End: Original strand, 8683862 - 8683923
Alignment:
Q  662 attattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagca 723  Q
    ||||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||    
T  8683862 attattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagca 8683923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 32431588 - 32431511
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || ||||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| |||| |||||    
T  32431588 tttgcaatgtgcattattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagtatgta 32431511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 36585141 - 36585218
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||||| |||| |||| || |||| ||||||||||||| ||||||||||    
T  36585141 tttgcaatgtgcactattcacttgacttatttttaccatacttttaaactaatgtataaatacaaatattagcatgta 36585218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Complemental strand, 42890537 - 42890496
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  42890537 catactttttaactaatatataaatacaaatattagcatgta 42890496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Complemental strand, 46103564 - 46103523
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  46103564 catactttttaactaatatataaatacaaatattagcatgta 46103523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 48602504 - 48602545
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  48602504 catactttttaactaatatataaatacaaatattagcatgta 48602545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 666 - 734
Target Start/End: Complemental strand, 3370470 - 3370402
Alignment:
Q  666 ttcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatatt 734  Q
    ||||||| ||||| ||| | |||| ||||||||||||||||||||||||||||||  ||||| ||||||    
T  3370470 ttcacatgacttactttgaccatattttttaattaatatataaatacaaatgttaatatgtaagatatt 3370402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 727
Target Start/End: Original strand, 5173261 - 5173360
Alignment:
Q  628 gttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||||||||| | ||||  |||||||| |||| |||||| || | ||| ||| |||||| | ||||| |||||||||||||||||| ||| ||||||    
T  5173261 gttttaaaatatacgttgcaattttgcaatgtgtactattcatatgatttactttgatcatattatttaactaatatataaatacaaatattaacatgta 5173360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 616815 - 616892
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  616815 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 616892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 623208 - 623285
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  623208 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 623285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 721
Target Start/End: Complemental strand, 33700289 - 33700232
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttag 721  Q
    |||||||||| |||| ||| | |||| ||||||| |||||||||||||||||||||||    
T  33700289 tattcacatagcttactttgaccatattttttaactaatatataaatacaaatgttag 33700232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 720
Target Start/End: Complemental strand, 34327278 - 34327222
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgtta 720  Q
    ||||||||||| ||| |||||||||| ||||| ||||||||||||| | ||||||||    
T  34327278 tattcacataatttatttttatcataattttttattaatatataaagataaatgtta 34327222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 132063 - 132126
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| |||||| ||||||| |||| ||||||||||||| ||||||||||    
T  132063 tattcacttgacttactttgatcatattttttaactaatgtataaatacaaatattagcatgta 132126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 733
Target Start/End: Original strand, 5878348 - 5878431
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgtatgatat 733  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| |||||||||| |||||    
T  5878348 tttgcaatgtgcactattcacttgacttactttgaccatattttttaactaatgtataaatacaaatattagcatgtaagatat 5878431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 40494430 - 40494493
Alignment:
Q  664 tattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    ||||||| | ||||| ||| | |||| ||||||| |||||||||||||||||| ||||||||||    
T  40494430 tattcacttgacttactttgaccatactttttaactaatatataaatacaaatattagcatgta 40494493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 724
Target Start/End: Original strand, 36167076 - 36167182
Alignment:
Q  618 tactccctttgttttaaaatatatgctgcatatttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatg 717  Q
    ||||||||  ||||||||||| |||   ||| |||||||| |||| ||||||| | ||||| ||| || ||| ||||| | |||| |||||||||||||     
T  36167076 tactccctccgttttaaaatacatgtatcatttttgcaatgtgtactattcacttgacttactttgattatactttttcactaatgtataaatacaaata 36167175  T
Q  718 ttagcat 724  Q
    |||||||    
T  36167176 ttagcat 36167182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 14237312 - 14237389
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  14237312 tttgcaatgtgcactattcacttgacttactttgaccatattttttaactaatgtataaatacaaatattagcatgta 14237389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 18035168 - 18035209
Alignment:
Q  686 catagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  18035168 cataatttttaactaatatataaatgcaaatgttagcatgta 18035209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 18044457 - 18044534
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  18044457 tttgcaatgtgcactattcacttgacttactttgaccatattttttaactaatgtataaatacaaatattagcatgta 18044534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 724
Target Start/End: Original strand, 18090389 - 18090434
Alignment:
Q  679 attttatcatagtttttaattaatatataaatacaaatgttagcat 724  Q
    |||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  18090389 atttgatcatattttttaactaatatataaatataaatgttagcat 18090434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 32998482 - 32998559
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  32998482 tttgcaatgtgcactattcacttgacttactttgaccatattttttaactaatgtataaatacaaatattagcatgta 32998559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Original strand, 41263842 - 41263919
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  41263842 tttgcaatgtgcactattcacttgacttactttgaccatattttttaactaatgtataaatacaaatattagcatgta 41263919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 727
Target Start/End: Complemental strand, 42587478 - 42587401
Alignment:
Q  650 tttgcaatatgtattattcacataacttaattttatcatagtttttaattaatatataaatacaaatgttagcatgta 727  Q
    |||||||| || | ||||||| | ||||| ||| | |||| ||||||| |||| ||||||||||||| ||||||||||    
T  42587478 tttgcaatgtgcactattcacttgacttactttgaccatactttttaactaatgtataaatacaaatattagcatgta 42587401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 724
Target Start/End: Complemental strand, 217064 - 217031
Alignment:
Q  691 tttttaattaatatataaatacaaatgttagcat 724  Q
    ||||||| ||||||||||||||||||||||||||    
T  217064 tttttaagtaatatataaatacaaatgttagcat 217031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University