View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_high_9 (Length: 388)
Name: NF18584_high_9
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 5872059 - 5872357
Alignment:
| Q |
14 |
catcaatagtactttctctaaccttttcactttttatattatgttgttttgagtattgaatagaaatttttggttttcttgttgaaggaggttattggac |
113 |
Q |
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| T |
5872059 |
catcaatagtactttctctaaccttttcactttttatattatgttgttttgagtattgaatagaaatttttggttttcttgttgaaggaggttattggac |
5872158 |
T |
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| Q |
114 |
ctgtattctttgcatttagagaatcctaaattgacacagtcaagcgatttcagtctattgaaaaacagtttaatttgaatgcatcgacagtgttaaaagt |
213 |
Q |
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| T |
5872159 |
ctgtattctttgcatttagagaatcctaaattgacacagtcaagcgatttcagtctattgaaaaacagtttaatttgaatgcatcgacagtgttaaaagt |
5872258 |
T |
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| Q |
214 |
tttacattgttagtccaccacaaccaaacatgtctgcgacttttgaggtgatcatagaaaaagtc-ttaacatttttgtttatcggatgactgtaaaca |
311 |
Q |
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| T |
5872259 |
tttacattgttagtccaccacaaccaaacatgtctgcgacttttgaggtgatcatagaaaaagtctttaacatttttgtttatcggatgactgtaaaca |
5872357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 5872385 - 5872443
Alignment:
| Q |
312 |
ttttgagccgtggaccttctaatttttacaagggttgtgctcacccctacagtcacttc |
370 |
Q |
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| T |
5872385 |
ttttgagctgtggaccttctaatttttacaagggttgtgctcacccctacagtcacttc |
5872443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 6082787 - 6082862
Alignment:
| Q |
180 |
agtttaatttgaatgcatcgacagtgttaaaagttttacattgttagtccaccacaaccaaacatgtctgcgactt |
255 |
Q |
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| T |
6082787 |
agtttaattttcatgcatcgccagtgtgaaaagttttacattgttagcacatcacaactaatcatgtatgtgactt |
6082862 |
T |
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