View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18584_low_1 (Length: 782)

Name: NF18584_low_1
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18584_low_1
NF18584_low_1
[»] chr3 (1 HSPs)
chr3 (1-680)||(53678934-53679605)


Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Original strand, 53678934 - 53679605
Alignment:
Q  1 tggagatacgtgaacttgacggtgtcaattgtttgcatgggaggaggagttgttaaggaaatctagggttttacttaacaatattaatttataggttagc 100  Q
    |||||| ||||||| |||  || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||     
T  53678934 tggagagacgtgaaattggtggcgtcgattgtttgcatgggaggaggagttgttaagggaatctagggttttacttaacaatattactttacacgttagt 53679033  T
Q  101 agtatggaaattagatcgggcagcggttactttgtccatggaacatatcatttagcttaatatgtttccaatgtttcccatgttcatacttctaattcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||         ||||||||||||||||||||||    
T  53679034 agtatggaaattagatcgggcagtggttactttgtccatggaacatatcagttagcttagtatgtttcc---------catgttcatacttctaattcaa 53679124  T
Q  201 attttctttggcactcagacattcatttgaaaagctatctatatttgcttggcgtcttatcagaaattggcttcctaccaagggacaatttattcgtgcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53679125 attttctttggcactcagacattcatttgaaaagctatctatgtttgcttggcgtcttatcagaaattggcttcctaccaagggacaatttattcgtgcg 53679224  T
Q  301 agacgtaggggtgttnnnnnnnct-gtcgaaccgcattgaaccaaactgttattaaactaaactggtttataaatgttcagactgaaccatatgaaaagg 399  Q
    |||||||||||||||          ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53679225 agacgtaggggtgttaaaaaaaaacgtcgagccgcactgaaccaaactgttattgaactaaactggtttataaatgttcagactgaaccatatgaaaagg 53679324  T
Q  400 tctggttactaactgaactgttttaacaagaagtgaaattgaaccagaatataactagcttaaaaacagaactgaaacatgacatatttaaaacgttaaa 499  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  53679325 tctggttactaactgaactgttttaacaagaactgaaattgaaccagaatataactagcttaaaaacaaaactgaaacataacatatttaaaacgttaaa 53679424  T
Q  500 cgtggtgaacaaaattgaaactttttaccaatctttcaatcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggt 599  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53679425 catggtgaacaaaattgaaattttttaccaatctttcaatcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggt 53679524  T
Q  600 tctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcaatgttgattaagcaggt 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  53679525 tctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcggtgttgattaagcaggt 53679605  T

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