View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_11 (Length: 388)
Name: NF18584_low_11
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 3706185 - 3706529
Alignment:
| Q |
19 |
cttagtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactagg |
118 |
Q |
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| T |
3706185 |
cttagtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaacaagaacaagctcgtcgactagg |
3706284 |
T |
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| Q |
119 |
tcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaaggaggtgaggcat |
218 |
Q |
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| T |
3706285 |
tcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaaggaggtgaggcat |
3706384 |
T |
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| Q |
219 |
gttggatggacttgaagaaggattgagttaggtccaaaccacctggtcccaatgatgaacctgatatgcttttgtgcatttggatttgcttgtgctgatt |
318 |
Q |
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| T |
3706385 |
gttggatggacttgaagaaggattgagttaggtccaaaccatctggtcccaatgatgaacctgatatgcttttgtgcattttgatttgcttgtgctgatt |
3706484 |
T |
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| Q |
319 |
tgagtaaaggtaaatgcgaagtgtgtgatgggaaaatttgatttg |
363 |
Q |
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| T |
3706485 |
tgagtaaaggtaaatgtgaagtgtgtgatgggaaaatttgatttg |
3706529 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 189
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
26 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
125 |
Q |
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| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
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| Q |
126 |
ttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
189 |
Q |
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| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
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