View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_13 (Length: 332)
Name: NF18584_low_13
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 45 - 316
Target Start/End: Complemental strand, 1798566 - 1798295
Alignment:
| Q |
45 |
gttattccctaattcggtaaaattataatcatattttgacaattcaaagnnnnnnnnnnnnnnnnnnnnnncctaatctggcattctattttgtgaaaca |
144 |
Q |
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| T |
1798566 |
gttattccctaattcggtaaaattataatcatattttgacaattcaaagtttttctttttacttactttttcctaatctggcattctattttgtgaaaca |
1798467 |
T |
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| Q |
145 |
taatctagaaaatttaagaaggaaaggctatataacctcgaacaacaattattcatgtttttaatgtcttgttgattcaatcttccatgcgattaaaaca |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1798466 |
taatctagaaaatttaagaaggaaaggctatataacctcaaacagcaattattcatgtttttaatgtctagttgattcaatcttccatgcgattaaaaca |
1798367 |
T |
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| Q |
245 |
tgatacgttaatcttgtgagcttaattcaattgacatggacattgcatttatatatgcatagtcgaacctta |
316 |
Q |
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||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| || ||||||| |
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| T |
1798366 |
tgacacgttaatcttgtgagtttaattcaattgatatggacattacatttatatatgcatattcaaacctta |
1798295 |
T |
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