View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_14 (Length: 313)
Name: NF18584_low_14
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 34008626 - 34008319
Alignment:
| Q |
1 |
tgaacaagatatacataagagtaat---tattcctacatcaaaacataaca-----tgaacatctttaactacgtgataccattgtgtctacaaattcaa |
92 |
Q |
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| T |
34008626 |
tgaacaagatatacataagagtaataattattcctacatcaaaacataacaatctatgaacatctttaactacgtgataccattgtgtctacaaattcaa |
34008527 |
T |
|
| Q |
93 |
cttgttttgcgtaattnnnnnnnnnnnnnnnnntcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattcta |
192 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34008526 |
cttgttttgcgtaattaaaaaaaaaaa------tcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattcta |
34008433 |
T |
|
| Q |
193 |
caccaccatttatgtttcatgcctaacgctttaattttcttccacgggctcttctatataaacctcttctataacaccaaccaaatcataacaattaaca |
292 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34008432 |
caccaccatttatgcttcatgcctaacgctttaattttcttccacgagctcctctatataaacctcttctataacaccaaccaaatcataacaattaaca |
34008333 |
T |
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| Q |
293 |
acctccctttgctt |
306 |
Q |
| |
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|||||||||||||| |
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| T |
34008332 |
acctccctttgctt |
34008319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 33995883 - 33995723
Alignment:
| Q |
126 |
tcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgtttcatgcc-taacgcttt |
224 |
Q |
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||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| || |||||||||||||||| ||| || |||||| |||| |||| |
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| T |
33995883 |
tcaacttgtttccaaattctacccc-acttatatgaagactaattaaaagttaatttggccattctacaccaccatgtatattccatgccgtaactcttt |
33995785 |
T |
|
| Q |
225 |
aattttcttccacgggctcttctatataaacctcttctataacaccaaccaaatcataacaa |
286 |
Q |
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||||| || ||| | | |||||||||||| || |||||| ||||||||| |||||||| |
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| T |
33995784 |
aatttcctgtcacacgaacctctatataaacccgttttataactccaaccaaagcataacaa |
33995723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 34000640 - 34000549
Alignment:
| Q |
126 |
tcaacttatttccaaattctacccccacttatatcaagactaattcaaagttaattcggtcattctacaccaccatttatgtttcatgccta |
217 |
Q |
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||||||| || ||||||||||||||||||||||| |||||||||| ||||| |||| |||||| ||||||||||| ||| ||||||||||| |
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| T |
34000640 |
tcaacttgttcccaaattctacccccacttatataaagactaattaaaagtcaatttggtcatcctacaccaccacatatatttcatgccta |
34000549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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