View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_15 (Length: 306)
Name: NF18584_low_15
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_15 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 22270367 - 22270649
Alignment:
| Q |
1 |
caattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22270367 |
caattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtagacatatactcatttggaatgttagtattagagat |
22270466 |
T |
|
| Q |
101 |
ggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22270467 |
ggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagataaaa |
22270566 |
T |
|
| Q |
201 |
gatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
283 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
22270567 |
gatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgctgaggaattgctaaaggatcc |
22270649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 22263473 - 22263191
Alignment:
| Q |
1 |
caattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22263473 |
caattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtagacatatactcatttggaatgttagtattagagat |
22263374 |
T |
|
| Q |
101 |
ggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22263373 |
ggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagataaaa |
22263274 |
T |
|
| Q |
201 |
gatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
283 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
22263273 |
gatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaacaagggctagaccttctgctgaggaattgctaaaggatcc |
22263191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 45873891 - 45873620
Alignment:
| Q |
12 |
acaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagatggtgacacttg |
111 |
Q |
| |
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||||| || ||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||| | |
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| T |
45873891 |
acaccagagtttatggcacctgaattatatgaagagaattacactgaattggtggacatatactcatttggaatgttagtactggagatggtgacacgag |
45873792 |
T |
|
| Q |
112 |
aaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgttgaagt |
211 |
Q |
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| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| | ||||| |
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| T |
45873791 |
agattccttatagtgaatgtgacaatgttgcaaagatatacaagaaggtgtcatcaggagtgagaccacaatccttgaacaagataaaagacgcagaagt |
45873692 |
T |
|
| Q |
212 |
gaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
283 |
Q |
| |
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|||| ||||||| |||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
45873691 |
gaaggctttcattgaaaagtgtcttgcaaaaccaagggacagaccttctgctgaggaattgctaaaggatcc |
45873620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 22265134 - 22265308
Alignment:
| Q |
109 |
ttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgttga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
22265134 |
ttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagataaaagatgctga |
22265233 |
T |
|
| Q |
209 |
agtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
283 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
22265234 |
agtcaagactttcatcgaaaagtgtcttgctcaatcaagggctagaccttctgctgaggaattgctaaaggatcc |
22265308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 10082417 - 10082141
Alignment:
| Q |
7 |
taggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagatggtgac |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||| ||||||||||||| |
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| T |
10082417 |
taggtacaccggaatttatggcaccagagttatatgaagagaattacactgagatggttgacatatactcattcggaatgttagtactagagatggtgac |
10082318 |
T |
|
| Q |
107 |
acttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgtt |
206 |
Q |
| |
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|| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||| ||||||| |||||||| ||||| ||||||||||| || |||| | |
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| T |
10082317 |
acgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtgagacctcaatcgttgaacaagataaaggatgct |
10082218 |
T |
|
| Q |
207 |
gaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
283 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| || || |||||||| ||||| |
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|
| T |
10082217 |
gaagtgaaggctttcattgaaaggtgtcttgctcaaccaagggctagaccttctgctgatgaattgctaaaagatcc |
10082141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 41244885 - 41244729
Alignment:
| Q |
1 |
caattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagat |
100 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||| |||| || || | ||||||||| |||||||||||||||||||||| |||| |||||||| || |
|
|
| T |
41244885 |
caattctcggcacaccagagtttatggctccagaattatacgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaat |
41244786 |
T |
|
| Q |
101 |
ggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaa |
157 |
Q |
| |
|
||||||| | |||||||| |||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
41244785 |
ggtgacattggaaattccttatagtgagtgtgacaatgttgccaaaatatacaagaa |
41244729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 42726751 - 42726887
Alignment:
| Q |
24 |
atggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatata |
123 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||| |||||||| |||||||||||||||||||||| | | || ||||| ||| | || || ||||||| |
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|
| T |
42726751 |
atggcacctgagctgtatgaggaagattacactgaaatggtagacatatactcatttggaatgtgtttgcttgaaatggttacaatggagataccatata |
42726850 |
T |
|
| Q |
124 |
gtgaatgtgacaatgttgcaaagatatacaagaaggt |
160 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| ||||| |
|
|
| T |
42726851 |
gtgaatgtgacagtgtagccaagatatacaaaaaggt |
42726887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 41244656 - 41244624
Alignment:
| Q |
230 |
gtgtcttgctcaaccaagggctagaccttctgc |
262 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
41244656 |
gtgtcttgctcagccaagggctagaccttctgc |
41244624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 20725 - 20861
Alignment:
| Q |
24 |
atggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatata |
123 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||| |||||||| |||||||||||||||||||||| | | || ||||| ||| | || || ||||||| |
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|
| T |
20725 |
atggcacctgagctgtatgaggaagattacactgaaatggtagacatatactcatttggaatgtgtttgcttgaaatggttacaatggagataccatata |
20824 |
T |
|
| Q |
124 |
gtgaatgtgacaatgttgcaaagatatacaagaaggt |
160 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| ||||| |
|
|
| T |
20825 |
gtgaatgtgacagtgtagccaagatatacaaaaaggt |
20861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 47005550 - 47005475
Alignment:
| Q |
12 |
acaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtggacatatactcatttggaatgt |
87 |
Q |
| |
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||||| || |||||||||||||| | ||||||||| |||||| ||| |||| ||||||||||| |||||||||| |
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|
| T |
47005550 |
acacctgagtttatggcaccagaagtgtatgaagaggattacaatgaattggttgacatatactcttttggaatgt |
47005475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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