View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_18 (Length: 269)
Name: NF18584_low_18
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 7156776 - 7156524
Alignment:
| Q |
11 |
cacagacttggggtttatatttaaatacagcttagaagacatgttcacaggagctatagaaacctgcagagaaaaagggctacttcctaaagttacagag |
110 |
Q |
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| T |
7156776 |
cacagacttggggtttatatttaaatacagcttagaagacatgttcacaggagctatagaaacctgcagagaaaaagggctacttcctaaagttacagag |
7156677 |
T |
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| Q |
111 |
actccggttaatgataccatgaagaaataaatatgcat-----gctt-------ttgtgtctctttttcctttttcatatgnnnnnnnnnnnngaaggat |
198 |
Q |
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| T |
7156676 |
actccggttaatgataccatgaagaaataaatatgcttttgtgtctttgatggattgtgtctctttttcctttttcatttgtgtttttttttttaaggat |
7156577 |
T |
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| Q |
199 |
cctttttcatatgttattaactaaggtttatgttatatgatgtcactcataat |
251 |
Q |
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| T |
7156576 |
cctttttcatatgttattaactaaggtttatgttatatgatgtcactcataat |
7156524 |
T |
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