View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_19 (Length: 255)
Name: NF18584_low_19
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 9038452 - 9038579
Alignment:
| Q |
16 |
agagatatgtcaaaaaacttaggttttgatgaagactacatagaaaaagcattcaacatgaagtcagggtttgatgtgatggccatgaatctttatccac |
115 |
Q |
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| T |
9038452 |
agagaaatttcaaaaaacttagggtttgatgaagactacatagaaaaagcattcaacatgaagtcagggtttgatgtgatggccatgaatctttatccac |
9038551 |
T |
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| Q |
116 |
caaattctagatccaagggtaatattgg |
143 |
Q |
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| T |
9038552 |
caaattctaaatccaagggtaatattgg |
9038579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 9047713 - 9047833
Alignment:
| Q |
23 |
tgtcaaaaaacttaggttttgatgaagactacatagaaaaagcattcaacatgaagtcagggtttgatgtgatggccatgaatctttatccaccaaattc |
122 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
9047713 |
tgtcaaaaaacttagggtttgatgaaaactacatagaaaaagcattcaacatgaagtcaggttttgatgtgatggccatgaatctttatccacccaattc |
9047812 |
T |
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| Q |
123 |
tagatccaagggtaatattgg |
143 |
Q |
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| T |
9047813 |
taaatccaagagtgatattgg |
9047833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 9030302 - 9030423
Alignment:
| Q |
22 |
atgtcaaaaaacttaggttttgatgaagactacatagaaaaagcattcaacatgaagtcagggtttgatgtgatggccatgaatctttatccaccaaatt |
121 |
Q |
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| T |
9030302 |
atgtcagaaaacttagggtttgatgaaaactacatagaggaagcattcaacatgaagtcagggtttgatgtaatggccatgaatctttatccaccaaatt |
9030401 |
T |
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| Q |
122 |
ctagatccaagggtaatattgg |
143 |
Q |
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| T |
9030402 |
ctaaatccaagggtgatattgg |
9030423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 9038407 - 9038480
Alignment:
| Q |
149 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatgtcaaaaaacttagggtttga |
222 |
Q |
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| T |
9038407 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatttcaaaaaacttagggtttga |
9038480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 9030251 - 9030324
Alignment:
| Q |
149 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatgtcaaaaaacttagggtttga |
222 |
Q |
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| T |
9030251 |
gaagattataacaaagaaatgagaaagattgtagttggattagcaagatcaatgtcagaaaacttagggtttga |
9030324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 9047661 - 9047734
Alignment:
| Q |
149 |
gaagaatataaccaagaaatgcgaaagattgtagctgggttagcaagagaaatgtcaaaaaacttagggtttga |
222 |
Q |
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||||||||| || || ||||| ||||| ||||||||| | ||||||||| | |||||||||||||||||||||| |
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| T |
9047661 |
gaagaatattacaaacaaatgagaaaggttgtagctgagctagcaagagcagtgtcaaaaaacttagggtttga |
9047734 |
T |
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