View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18584_low_3 (Length: 643)

Name: NF18584_low_3
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18584_low_3
NF18584_low_3
[»] chr3 (28 HSPs)
chr3 (1-336)||(30056924-30057259)
chr3 (376-626)||(30056634-30056884)
chr3 (517-622)||(30086822-30086928)
chr3 (517-625)||(30069440-30069549)
chr3 (517-626)||(30050177-30050287)
chr3 (457-594)||(30074726-30074881)
chr3 (186-336)||(30045383-30045534)
chr3 (173-336)||(30174601-30174762)
chr3 (534-622)||(30073051-30073140)
chr3 (526-626)||(30082054-30082155)
chr3 (215-336)||(30155520-30155642)
chr3 (175-336)||(30458280-30458441)
chr3 (517-575)||(30458626-30458684)
chr3 (33-169)||(814354-814492)
chr3 (561-626)||(30174060-30174126)
chr3 (522-610)||(30154777-30154867)
chr3 (6-150)||(18088077-18088219)
chr3 (42-146)||(42531318-42531422)
chr3 (69-169)||(46691454-46691553)
chr3 (383-432)||(30174503-30174552)
chr3 (86-169)||(814266-814348)
chr3 (77-137)||(50294694-50294754)
chr3 (562-624)||(29920296-29920359)
chr3 (562-624)||(29969449-29969512)
chr3 (411-458)||(30050319-30050366)
chr3 (411-458)||(30069581-30069628)
chr3 (64-137)||(16463005-16463077)
chr3 (594-626)||(25481281-25481313)
[»] chr6 (9 HSPs)
chr6 (8-146)||(22868490-22868628)
chr6 (71-146)||(9290661-9290736)
chr6 (6-137)||(33423919-33424050)
chr6 (6-100)||(18792787-18792879)
chr6 (21-146)||(18984526-18984651)
chr6 (568-624)||(35162435-35162492)
chr6 (61-99)||(2979663-2979701)
chr6 (24-136)||(13166474-13166585)
chr6 (63-123)||(28063007-28063066)
[»] chr7 (8 HSPs)
chr7 (63-169)||(46963063-46963169)
chr7 (6-146)||(6840549-6840688)
chr7 (63-146)||(46964417-46964500)
chr7 (61-137)||(2628240-2628316)
chr7 (6-126)||(15614192-15614312)
chr7 (63-127)||(26403495-26403559)
chr7 (64-137)||(21814465-21814537)
chr7 (86-127)||(44337395-44337436)
[»] chr4 (7 HSPs)
chr4 (63-169)||(16871657-16871763)
chr4 (1-146)||(16543389-16543534)
chr4 (61-137)||(37945522-37945598)
chr4 (86-168)||(16869513-16869595)
chr4 (30-137)||(54146652-54146758)
chr4 (61-150)||(54148300-54148387)
chr4 (70-126)||(24131825-24131881)
[»] chr2 (5 HSPs)
chr2 (63-169)||(8986933-8987039)
chr2 (63-169)||(8985580-8985686)
chr2 (36-137)||(32291193-32291294)
chr2 (6-43)||(29408985-29409022)
chr2 (34-102)||(42633677-42633745)
[»] chr1 (5 HSPs)
chr1 (63-169)||(6696021-6696127)
chr1 (6-108)||(9168385-9168487)
chr1 (62-146)||(15629345-15629429)
chr1 (62-146)||(15630144-15630228)
chr1 (6-137)||(28665018-28665146)
[»] chr8 (5 HSPs)
chr8 (6-125)||(44374661-44374779)
chr8 (42-169)||(33199415-33199543)
chr8 (88-146)||(43615487-43615545)
chr8 (86-127)||(20241073-20241114)
chr8 (86-127)||(20251953-20251994)
[»] chr5 (3 HSPs)
chr5 (9-138)||(11343870-11343998)
chr5 (61-127)||(24137646-24137712)
chr5 (77-137)||(11320488-11320547)
[»] scaffold0511 (1 HSPs)
scaffold0511 (6-100)||(11262-11354)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-163; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 30057259 - 30056924
Alignment:
Q  1 aaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatata 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30057259 aaatacaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattataagagaatata 30057160  T
Q  101 taacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttattataccagtatcaaccttttggaaatcgcttgga 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30057159 taacaaaatctaatggactctaacttatgaatataaatgcccaataacttgagtttaatactttattataccagtatcaaccttttggaaatcgcttgga 30057060  T
Q  201 aaatagggattttcatttccttcggtaaagacttttatgagttcttatttccctttgaaaataacttgtgtgccgactattgcattacaaattaagatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30057059 aaatagggattttcatttccttcggtaaagacttttatgagttcttatttccctttgaaaataacttgtgtgccgactattgcattacaaattaagatgt 30056960  T
Q  301 tgatgccacgtcgccaatcattatatgtcgataatg 336  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30056959 tgatgccacgtcgccaatctttatatgtcgataatg 30056924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 376 - 626
Target Start/End: Complemental strand, 30056884 - 30056634
Alignment:
Q  376 aatctctgagttattatagtagtagtcgatccttgtacatagtgtgtgtttgtttaccctgtgttatagataagcatatagaagtttattcttttaagag 475  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30056884 aatctctcagttattatagtagtagtcgatccttgtacatagtgtgtgtttgtttaccctctgttatagataagcatatagaagtttattcttttaagag 30056785  T
Q  476 ggataccatacagaagccgttaacaattacctcagcttgtgtattaaattaacctcgtgtccctcgcttttgaatttaataggacaatttcaggatccat 575  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  30056784 ggataccatacagaagcctttaacaattacctcagcttgtgtattaaattaacttcgtgtccctcacttttgaatttaataggacaatttcaggatccat 30056685  T
Q  576 ggataaggcaaaaacattattttgtctataaattgatgcatgcaagaaatg 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30056684 ggataaggcaaaaacattattttgtctataaattgatgcatgcaagaaatg 30056634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 517 - 622
Target Start/End: Complemental strand, 30086928 - 30086822
Alignment:
Q  517 tattaaattaacctcgtgtccctcgcttttgaatttaataggacaatttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgca 615  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30086928 tattaaattaacctcgtgtccctcgcttctgaatttaataagacaatttgaggatccatggataaggcaaaaacattaattttgtctataaattgatgca 30086829  T
Q  616 tgcaaga 622  Q
    |||||||    
T  30086828 tgcaaga 30086822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 517 - 625
Target Start/End: Complemental strand, 30069549 - 30069440
Alignment:
Q  517 tattaaattaacctcgtgtccctcgcttttgaatttaataggacaatttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgca 615  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  30069549 tattaaattaacctcgtgtccctcgctgttgaatttaataagacaatttgaggatccatggataagggaaaaacattaattttgtctataaattgatgca 30069450  T
Q  616 tgcaagaaat 625  Q
    ||||||||||    
T  30069449 tgcaagaaat 30069440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 517 - 626
Target Start/End: Complemental strand, 30050287 - 30050177
Alignment:
Q  517 tattaaattaacctcgtgtccctcgcttttgaatttaataggacaatttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgca 615  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30050287 tattaaattaacctcgtgtccctcgctgttgaatttaataaaacaatttgaagatccatggataaggcaaaaacattaattttgtctataaattgatgca 30050188  T
Q  616 tgcaagaaatg 626  Q
    |||||||||||    
T  30050187 tgcaagaaatg 30050177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 457 - 594
Target Start/End: Complemental strand, 30074881 - 30074726
Alignment:
Q  457 aagtttattcttttaagagggataccatacagaagccgttaacaattacctcagcttgtgta------------------ttaaattaacctcgtgtccc 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                  ||||||||||||||||||||    
T  30074881 aagtttattcttttaagagggataccatacagaagccgttaacaattacctctgcttgtgtaatgcagtgggaatggttattaaattaacctcgtgtccc 30074782  T
Q  539 tcgcttttgaatttaataggacaatttcaggatccatggataaggcaaaaacatta 594  Q
    |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  30074781 tcgcttctgaatttaataagacaatttgaggatccatggataaggcaaaaacatta 30074726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 186 - 336
Target Start/End: Complemental strand, 30045534 - 30045383
Alignment:
Q  186 tggaaatcgcttggaaaatagggattttcatttccttcggtaaagacttttat----gagttcttatttccctttgaaaataacttgtgtgccgactatt 281  Q
    |||||||| |||| ||||||||||||  ||||||||| |||| ||||||||||    ||||||| | ||||||| |||||||| ||||||||||||||||    
T  30045534 tggaaatcacttgaaaaatagggatt--catttcctttggtatagacttttatatatgagttctcacttccctt-gaaaataagttgtgtgccgactatt 30045438  T
Q  282 gcattacaaattaagatgttgatgccacgtcgccaatcattatatgtcgataatg 336  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||    
T  30045437 gcattacatattaagatgctgatgccacgtcgccaatctttatatatcgataatg 30045383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 173 - 336
Target Start/End: Complemental strand, 30174762 - 30174601
Alignment:
Q  173 agtatcaaccttttggaaatcgcttggaaaatagggattttcatttccttcggtaaagacttttatgagttcttatttccctttgaaaataacttgtgtg 272  Q
    |||||| ||||| || ||||| |||||||||| ||||||  |||||||||  |||||| |||||||||||||  ||||||||| |||||||||||| |||    
T  30174762 agtatctaccttatgaaaatcacttggaaaatggggatt--catttcctttagtaaaggcttttatgagttcacatttccctt-gaaaataacttgcgtg 30174666  T
Q  273 ccgactattgcattacaaattaagatgttgatgccacgtcgcc-aatcattatatgtcgataatg 336  Q
    || |||||||||||||| |||||||||||||||||||||| || |||| ||||||||| ||||||    
T  30174665 ccaactattgcattacatattaagatgttgatgccacgtccccaaatctttatatgtctataatg 30174601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 534 - 622
Target Start/End: Complemental strand, 30073140 - 30073051
Alignment:
Q  534 gtccctcgcttttgaatttaataggacaatttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaaga 622  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30073140 gtccctcgcttctgaatttaataagacaatttgaggatccatggataaggcaaaaacattaattttgtctataaattgatgcatgcaaga 30073051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 526 - 626
Target Start/End: Complemental strand, 30082155 - 30082054
Alignment:
Q  526 aacctcgtgtccctcgcttttgaatttaataggacaatttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaagaaa 624  Q
    ||||||||||||||||||| ||||| ||||| |||||||| ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30082155 aacctcgtgtccctcgcttctgaatataataagacaatttgaggatccactgataaggcaaaaacattaattttgtctataaattgatgcatgcaagaaa 30082056  T
Q  625 tg 626  Q
    ||    
T  30082055 tg 30082054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 30155642 - 30155520
Alignment:
Q  215 atttccttcggtaaagacttttat--gagttcttatttccctttgaaaataacttgtgtgccgactattgcattacaaattaagatgttgatgccacgtc 312  Q
    |||||||| |||||||||||||||  ||||||| |||||| ||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||    
T  30155642 atttcctttggtaaagacttttatatgagttctcatttcc-tttgaaaatgatttgtgtgccgactattgcattacatattaagatgtcgatgccacgtc 30155544  T
Q  313 gccaatcattatatgtcgataatg 336  Q
    ||||||| ||  ||||||||||||    
T  30155543 gccaatctttcaatgtcgataatg 30155520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 30458280 - 30458441
Alignment:
Q  175 tatcaaccttttggaaatcgcttggaaaatagggattttcatttccttcggtaaagacttttat--gagttcttatttccctttgaaaataacttgtgtg 272  Q
    |||| ||||| ||| |||| |||||||||| ||||||  || || ||| |||||||||||||||  ||||||| ||||||||| |||||||||||| |||    
T  30458280 tatctaccttgtggtaatcacttggaaaatggggatt--cacttgctttggtaaagacttttatatgagttctcatttccctt-gaaaataacttgcgtg 30458376  T
Q  273 ccgactattg-cattacaaattaagatgttgatgccacgtcgccaatcattatatgtcgataatg 336  Q
    | |||||||| ||||||| ||||||||||||||| || |||||||||| ||||||||| ||||||    
T  30458377 cggactattggcattacatattaagatgttgatgtcaagtcgccaatctttatatgtctataatg 30458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 517 - 575
Target Start/End: Original strand, 30458626 - 30458684
Alignment:
Q  517 tattaaattaacctcgtgtccctcgcttttgaatttaataggacaatttcaggatccat 575  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30458626 tattaaattaacctcgtgtccctcgcttttgaatttaataagacaatttcaggatccat 30458684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 814354 - 814492
Alignment:
Q  33 aacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagaga--atatataacaaaatctaatagactctaacttatga 130  Q
    ||||||||| ||||| |||||  |||| | ||||||||||||| ||||| || ||||||||||  ||||||||| ||| ||||| ||||||||||||  |    
T  814354 aacaaagacagctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttacta 814453  T
Q  131 atataaatgcccaatagctttagtttgatactttattat 169  Q
    |||||||||||||||| ||| |||   ||||||||||||    
T  814454 atataaatgcccaataacttaagtccaatactttattat 814492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 30174126 - 30174060
Alignment:
Q  561 aatttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaagaaatg 626  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  30174126 aatttgaggatccatggataaggcaaaaacattaactttgtctataaattgattcatgcaagaaatg 30174060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 522 - 610
Target Start/End: Complemental strand, 30154867 - 30154777
Alignment:
Q  522 aattaacctcgtgtccctcgcttttgaatttaataggacaat--ttcaggatccatggataaggcaaaaacattattttgtctataaattg 610  Q
    |||||||||||||| |||| ||| ||||||||||| | ||||  |||||||| ||||||| || ||||||||||||||| |||||||||||    
T  30154867 aattaacctcgtgttcctcacttctgaatttaataaggcaatatttcaggatacatggatcagacaaaaacattattttatctataaattg 30154777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 18088077 - 18088219
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 105  Q
    |||||||||||| ||||||||| | | |||||| ||||||||||||||  ||||  ||||||||||   | |||||||  |||| ||||||||||||| |    
T  18088077 caaaatagagaaagagagaatagggaaaacaaa-acggctagggtttcatagaatgtcaatagcttgctattacaaaatgttatgagagaatatataata 18088175  T
Q  106 aaatctaatagactctaacttatgaatataaatgcccaatagctt 150  Q
    ||  ||||| ||||||||||||  |||||||| ||| ||||||||    
T  18088176 aac-ctaatggactctaacttactaatataaaggcctaatagctt 18088219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 42531422 - 42531318
Alignment:
Q  42 ggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcc 141  Q
    ||||||||||||  | || |||||| |||||||| |||||||| |||||||||||||||||| |||| |||||  ||| |||||||  |||||||| | |    
T  42531422 ggctagggtttcatacaatatcaatggcttaacattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaagtc 42531323  T
Q  142 caata 146  Q
    |||||    
T  42531322 caata 42531318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 46691454 - 46691553
Alignment:
Q  69 cttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttatta 168  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||||| ||||||||||||  | |||||| | |||||| ||| ||||  |||||||||||    
T  46691454 cttaacattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtataaaggtccaataacttaagttcaatactttatta 46691552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 30174552 - 30174503
Alignment:
Q  383 gagttattatagtagtagtcgatccttgtacatagtgtgtgtttgtttac 432  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  30174552 gagttattatagtagtagtcggtccttgtacaaagtttgtgtttgtttac 30174503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 814348 - 814266
Alignment:
Q  86 ttataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttattat 169  Q
    ||||||||||||||| ||| ||| ||||| ||||||||||||  ||||||||||||||||| ||| |||   ||||||||||||    
T  814348 ttataagagaatata-aacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattat 814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 50294754 - 50294694
Alignment:
Q  77 tacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 137  Q
    |||||||  |||||||| ||||||||| |||| ||||| ||||||||||||| ||||||||    
T  50294754 tacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaa 50294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 562 - 624
Target Start/End: Original strand, 29920296 - 29920359
Alignment:
Q  562 atttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaagaaa 624  Q
    ||||| ||||| |||||| | |||||| |||| ||||||||||||||||| |||||||||||||    
T  29920296 atttccggatcgatggatcatgcaaaaccatttattttgtctataaattggtgcatgcaagaaa 29920359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 562 - 624
Target Start/End: Original strand, 29969449 - 29969512
Alignment:
Q  562 atttcaggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaagaaa 624  Q
    ||||| ||||| |||||| | |||||| |||| ||||||||||||||||| |||||||||||||    
T  29969449 atttccggatcgatggatcatgcaaaaccatttattttgtctataaattggtgcatgcaagaaa 29969512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 30050366 - 30050319
Alignment:
Q  411 tacatagtgtgtgtttgtttaccctgtgttatagataagcatatagaa 458  Q
    |||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  30050366 tacagagtttgtgtttgtttaccctcagttatagataagcatatagaa 30050319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 30069628 - 30069581
Alignment:
Q  411 tacatagtgtgtgtttgtttaccctgtgttatagataagcatatagaa 458  Q
    |||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  30069628 tacagagtttgtgtttgtttaccctcagttatagataagcatatagaa 30069581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 16463077 - 16463005
Alignment:
Q  64 aatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 137  Q
    ||||| |||||| ||||||||| ||| |||||||||||||  ||| ||||| ||||||||||||  ||||||||    
T  16463077 aatagattaacattacaaaagaatattagagaatatataa-taaacctaatggactctaacttactaatataaa 16463005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 626
Target Start/End: Original strand, 25481281 - 25481313
Alignment:
Q  594 attttgtctataaattgatgcatgcaagaaatg 626  Q
    ||||||||||||||||| |||||||||||||||    
T  25481281 attttgtctataaattggtgcatgcaagaaatg 25481313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 22868628 - 22868490
Alignment:
Q  8 aaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaa 107  Q
    |||||||||  || |||||| |||||||||||| ||||||||||||  |||| ||||||||| ||||| |||||||  |||||||||||||||||| |||    
T  22868628 aaatagagagagaaagaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataaa 22868529  T
Q  108 atctaatagactctaacttatgaatataaatgcccaata 146  Q
    | ||||| ||||||||||||  |||||||| ||||||||    
T  22868528 acctaatggactctaacttactaatataaaagcccaata 22868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 9290661 - 9290736
Alignment:
Q  71 taacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||| ||||||||||||| |||||||| || |||||    
T  9290661 taacattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaaggctcaata 9290736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 33423919 - 33424050
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 105  Q
    |||||||||||| |||||||    ||||| ||||||||||||||||||| |||| | |||||||| |||| |||||| | ||||  |||||||||||| |    
T  33423919 caaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggttatgggagaatatataata 33424018  T
Q  106 aaatctaatagactctaacttatgaatataaa 137  Q
    ||| |||||  ||| |||||||  ||||||||    
T  33424019 aaacctaatgaactttaacttactaatataaa 33424050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 18792787 - 18792879
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatata 100  Q
    ||||||||||||  ||||||||  ||||||||| |||||||| |||||  | || |||||||| |||||| |||||||| |||||||||||||||    
T  18792787 caaaatagagaa--agagaataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatata 18792879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 18984651 - 18984526
Alignment:
Q  21 gagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactc 120  Q
    |||||||  ||||| ||| ||||||||||||||  | || | ||||||| |  || ||| |||| |||||||||||||||||| ||||  ||||  ||||    
T  18984651 gagaatagaaacaagaaaaacggctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataaaacataatgtactc 18984552  T
Q  121 taacttatgaatataaatgcccaata 146  Q
    |||||||  |||||||| ||||||||    
T  18984551 taacttactaatataaaggcccaata 18984526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 568 - 624
Target Start/End: Original strand, 35162435 - 35162492
Alignment:
Q  568 ggatccatggataaggcaaaaacatt-attttgtctataaattgatgcatgcaagaaa 624  Q
    ||||| |||||| | |||||| |||| |||||||||||||||||||||||||||||||    
T  35162435 ggatcgatggatcatgcaaaagcatttattttgtctataaattgatgcatgcaagaaa 35162492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 2979701 - 2979663
Alignment:
Q  61 atcaatagcttaacagtacaaaagattataagagaatat 99  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  2979701 atcaatagcttaacattacaaaagattacaagagaatat 2979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 13166585 - 13166474
Alignment:
Q  24 aatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaa 123  Q
    |||| |||||||||  ||||||||||||||  | || |||||| |||||||| || ||||| |||| ||||||||||||| || |  ||||  |||||||    
T  13166585 aataggaacaacaataacggctagggtttcataaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataacacttaatgaactctaa 13166487  T
Q  124 cttatgaatataa 136  Q
    ||| | |||||||    
T  13166486 cttgttaatataa 13166474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 28063007 - 28063066
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaa 123  Q
    ||||||||||||| |||||||| |||  ||||||||||| | |||||||||| ||||||||    
T  28063007 caatagcttaacattacaaaaggttactagagaatatat-ataaaatctaatggactctaa 28063066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 46963063 - 46963169
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 162  Q
    ||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  46963063 caatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatact 46963162  T
Q  163 ttattat 169  Q
    |||||||    
T  46963163 ttattat 46963169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 6840549 - 6840688
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 105  Q
    ||||||||||||  ||||||||| || ||||||||||| || ||||||  | || ||||||||||| ||| |||||||| |||||| ||||||||||| |    
T  6840549 caaaatagagaaacagagaatat-aagaacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggttataaaagaatatataata 6840647  T
Q  106 aaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    ||| ||||  ||||||||||||   ||||||| ||||||||    
T  6840648 aaacctaacggactctaacttactgatataaaggcccaata 6840688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 46964417 - 46964500
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    ||||||||||| | |||||||  |||||||||||||||||| |||||||||| ||||||||| ||  |||||||||||||||||    
T  46964417 caatagcttaatattacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaata 46964500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 2628240 - 2628316
Alignment:
Q  61 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 137  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||| |||| ||||| ||||||||||||  ||||||||    
T  2628240 atcaatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaa 2628316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 15614192 - 15614312
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 105  Q
    |||||||||||| |||| |||   ||| | ||||||  ||||||||||  |||| | ||||||||||| | |||||||| |||||| ||||||||||| |    
T  15614192 caaaatagagaaagagataatcaaaacgataaagacaactagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataata 15614291  T
Q  106 aaatctaatagactctaactt 126  Q
    ||| ||||| |||||||||||    
T  15614292 aaacctaatggactctaactt 15614312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 26403559 - 26403495
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaactta 127  Q
    ||||||| ||||| |||||||  |||||||||||||||||| |||||||||| | ||||||||||    
T  26403559 caatagcataacattacaaaaagttataagagaatatataataaaatctaatcggctctaactta 26403495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 21814537 - 21814465
Alignment:
Q  64 aatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 137  Q
    ||||| |||||| ||||||||| ||| |||||||||||||  ||| ||||| ||||||||||||  ||||||||    
T  21814537 aatagattaacattacaaaagaatattagagaatatataa-taaacctaatggactctaacttactaatataaa 21814465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 44337436 - 44337395
Alignment:
Q  86 ttataagagaatatataacaaaatctaatagactctaactta 127  Q
    |||||||||||||||||| |||||||||  ||||||||||||    
T  44337436 ttataagagaatatataataaaatctaacggactctaactta 44337395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 16871763 - 16871657
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 162  Q
    ||||||||||||| |||||||| |||||||| ||||||||| |||||||||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  16871763 caatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatact 16871664  T
Q  163 ttattat 169  Q
    |||||||    
T  16871663 ttattat 16871657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 16543534 - 16543389
Alignment:
Q  1 aaattcaaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatata 100  Q
    |||| |||| ||||||| |||| ||||||||||||||||||||||||||||||  |||| ||||||| ||||||| | |||||| ||| | |||||||||    
T  16543534 aaatacaaattagagaaagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatata 16543435  T
Q  101 taacaaaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    ||| ||||  ||||  |||||||||||  |||||||| | ||||||    
T  16543434 taataaaacttaatgaactctaacttactaatataaaaggccaata 16543389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 37945598 - 37945522
Alignment:
Q  61 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 137  Q
    |||||| | |||||| |||||||| |||||||||||||||||| ||||| |||| ||||||||||||  ||||||||    
T  37945598 atcaattgattaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 16869595 - 16869513
Alignment:
Q  86 ttataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatactttatta 168  Q
    |||||||||| ||||||| ||||||||||  |||||||||||  |||||||| |||||||| ||| || |  |||||||||||    
T  16869595 ttataagagagtatataataaaatctaatgaactctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 54146758 - 54146652
Alignment:
Q  30 aacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatg 129  Q
    ||||||||||||||||||| ||    | || ||||||||||||| | |||||||  |||| ||||||||||| |  ||||||||| ||||||||||||      
T  54146758 aacaacaaagacggctaggtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatga-taaatctaatggactctaacttact 54146660  T
Q  130 aatataaa 137  Q
    ||||||||    
T  54146659 aatataaa 54146652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 54148387 - 54148300
Alignment:
Q  61 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctt 150  Q
    ||||||||||||| | |||||| | |||| ||||||||||||| ||| |||| | ||||||||||||  |||||||| ||| ||||||||    
T  54148387 atcaatagcttaataatacaaatg-ttatgagagaatatataataaa-tctattggactctaacttactaatataaaagcctaatagctt 54148300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 24131881 - 24131825
Alignment:
Q  70 ttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaactt 126  Q
    |||||| |||||||  ||||||||||| |||||| |||| ||||| |||||||||||    
T  24131881 ttaacattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 8987039 - 8986933
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 162  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  8987039 caatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatgcccaataacttaagcctaatact 8986940  T
Q  163 ttattat 169  Q
    |||||||    
T  8986939 ttattat 8986933  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 8985686 - 8985580
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 162  Q
    ||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||| |||||||  |||||||||| |||||| ||| ||  | |||||    
T  8985686 caatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataacttaagcctaatact 8985587  T
Q  163 ttattat 169  Q
    |||||||    
T  8985586 ttattat 8985580  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 32291294 - 32291193
Alignment:
Q  36 aaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatata 135  Q
    ||||||||||| ||||||  |||| |||||| ||||  || |||||||| |||||||||||||||||| |||   |||| ||||||||||||  ||||||    
T  32291294 aaagacggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatata 32291195  T
Q  136 aa 137  Q
    ||    
T  32291194 aa 32291193  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 29408985 - 29409022
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacgg 43  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  29408985 caaaatagagaaagagagaataagaacaacaaagacgg 29409022  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 42633677 - 42633745
Alignment:
Q  34 acaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatata 102  Q
    ||||| |||| || ||||||  |||| |||||| |||||||| ||||||||||||  ||||||||||||    
T  42633677 acaaaaacggttatggtttcatagaatatcaattgcttaacattacaaaagattactagagaatatata 42633745  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 6696127 - 6696021
Alignment:
Q  63 caatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaatagctttagtttgatact 162  Q
    ||||||||||||| |||||||| |||||||||||||| ||| |||||||||| ||||||||||||  ||||||||||||||||| ||| ||  | |||||    
T  6696127 caatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatact 6696028  T
Q  163 ttattat 169  Q
    |||||||    
T  6696027 ttattat 6696021  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 9168385 - 9168487
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 105  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||  | || ||||||| ||| | |  ||||||  |||||||||||||||||| |    
T  9168385 caaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataata 9168484  T
Q  106 aaa 108  Q
    |||    
T  9168485 aaa 9168487  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 15629345 - 15629429
Alignment:
Q  62 tcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    |||||||||||| | |||||||| |||||||||||||||||| ||||||||||  |||||||||||  |||||||| | ||||||    
T  15629345 tcaatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataaaggtccaata 15629429  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 15630144 - 15630228
Alignment:
Q  62 tcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    |||||| ||||| | | |||||| |||||||||||||||||| |||| ||||||||||||||||||  |||||||| ||||||||    
T  15630144 tcaataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaaggcccaata 15630228  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 28665146 - 28665018
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcgg-agaacatcaatagcttaacagtacaaaagattataagagaatatataac 104  Q
    |||||| ||||| ||||||||| |||||||   |||||||||||||||   |||| | ||||||||||| | |||||||  |||| |||||||||||||     
T  28665146 caaaatggagaaagagagaataggaacaac---gacggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagagaatatataa- 28665051  T
Q  105 aaaatctaatagactctaacttatgaatataaa 137  Q
     ||| ||||| ||||||||||||  ||||||||    
T  28665050 taaacctaatggactctaacttactaatataaa 28665018  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 44374779 - 44374661
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataaca 105  Q
    |||||||||||| |||| |||||||||||||||||||||||   ||||  || | |||||||||| |||| || |||||||||||| ||||||||||| |    
T  44374779 caaaatagagaaagagataatatgaacaacaaagacggctaaa-tttcatagcatatcaatagctaaacattaaaaaagattataaaagaatatataata 44374681  T
Q  106 aaatctaatagactctaact 125  Q
    |||  |||||||||||||||    
T  44374680 aaacataatagactctaact 44374661  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 33199543 - 33199415
Alignment:
Q  42 ggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaa-tagactctaacttatgaatataaatgc 140  Q
    |||||| |||||  |||||||||| | ||||||| ||||||||||||||||  ||||||||| |||| |||| || ||||| |||||  |||||||| ||    
T  33199543 ggctagagtttcatagaacatcaacaacttaacattacaaaagattataaggaaatatataataaaacctaattatactctgacttactaatataaaagc 33199444  T
Q  141 ccaatagctttagtttgatactttattat 169  Q
     ||||| ||| || |  ||||||||||||    
T  33199443 tcaataacttaagatcaatactttattat 33199415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 43615545 - 43615487
Alignment:
Q  88 ataagagaatatataacaaaatctaatagactctaacttatgaatataaatgcccaata 146  Q
    |||||| ||||||||| |||||||||| ||||||||||||  |||||||| || |||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaagctcaata 43615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 20241114 - 20241073
Alignment:
Q  86 ttataagagaatatataacaaaatctaatagactctaactta 127  Q
    |||||||||||||||||| |||||||||  ||||||||||||    
T  20241114 ttataagagaatatataataaaatctaacggactctaactta 20241073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 20251953 - 20251994
Alignment:
Q  86 ttataagagaatatataacaaaatctaatagactctaactta 127  Q
    |||||||||||||||||| |||||||||  ||||||||||||    
T  20251953 ttataagagaatatataataaaatctaacggactctaactta 20251994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 11343870 - 11343998
Alignment:
Q  9 aatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtac-aaaagattataagagaatatataacaaa 107  Q
    ||||||||| ||||||| ||||| |||||||||||||| ||||||  | || ||||||||||||||| ||| ||||  |||||||||| ||||||| |||    
T  11343870 aatagagaaagagagaacatgaataacaaagacggctaaggtttcata-aaaatcaatagcttaacattacaaaaatgttataagagagtatataataaa 11343968  T
Q  108 atctaatagactctaacttatgaatataaat 138  Q
    |  |||| ||||||||||||  |||||||||    
T  11343969 acttaat-gactctaacttactaatataaat 11343998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 24137712 - 24137646
Alignment:
Q  61 atcaatagcttaacagtacaaaagattataagagaatatataacaaaatctaatagactctaactta 127  Q
    |||||| |||||||| |||| ||| |||||||||||||||||| |||| ||||||||||||||||||    
T  24137712 atcaattgcttaacattacagaaggttataagagaatatataataaaacctaatagactctaactta 24137646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 11320488 - 11320547
Alignment:
Q  77 tacaaaagattataagagaatatataacaaaatctaatagactctaacttatgaatataaa 137  Q
    |||||||| |||||||||||||||||| ||||| |||| ||||| ||||||  ||||||||    
T  11320488 tacaaaaggttataagagaatatataataaaat-taatggactccaacttactaatataaa 11320547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 11354 - 11262
Alignment:
Q  6 caaaatagagaacgagagaatatgaacaacaaagacggctagggtttcggagaacatcaatagcttaacagtacaaaagattataagagaatata 100  Q
    ||||||||||||  ||||||||  ||||||||| |||||||| |||||  | || |||||||| |||||| |||||||| |||||||||||||||    
T  11354 caaaatagagaa--agagaataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatata 11262  T

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