View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18584_low_5 (Length: 545)

Name: NF18584_low_5
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18584_low_5
NF18584_low_5
[»] chr3 (3 HSPs)
chr3 (18-301)||(51420906-51421189)
chr3 (184-301)||(51421562-51421678)
chr3 (207-273)||(49287770-49287838)
[»] chr1 (2 HSPs)
chr1 (18-301)||(38931848-38932131)
chr1 (184-301)||(38931359-38931475)
[»] chr5 (4 HSPs)
chr5 (305-435)||(38690555-38690685)
chr5 (338-418)||(38703425-38703507)
chr5 (218-266)||(32944404-32944452)
chr5 (246-278)||(38064839-38064871)
[»] chr8 (5 HSPs)
chr8 (200-301)||(13934955-13935056)
chr8 (184-301)||(37562340-37562456)
chr8 (18-118)||(37562837-37562937)
chr8 (176-255)||(37562938-37563017)
chr8 (243-271)||(1487662-1487690)
[»] chr2 (1 HSPs)
chr2 (189-273)||(4386088-4386173)
[»] chr4 (1 HSPs)
chr4 (218-266)||(33370795-33370843)
[»] chr7 (3 HSPs)
chr7 (218-266)||(32548591-32548641)
chr7 (221-273)||(35770357-35770411)
chr7 (246-278)||(8464465-8464497)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 51421189 - 51420906
Alignment:
Q  18 caaatctgatattcacttcatatataataatgaacaatcaaaaccatgatcaatgttttggattgggattaatacattgtagcaaagaaaataaaataag 117  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||| |||| |||||||||||||| | ||||||||||||||||||    
T  51421189 caaatctgatatccacttcatatataataataaacaatcaaaaccatgagaaatgttttagatttggattaatacattgcatcaaagaaaataaaataag 51421090  T
Q  118 gatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgattagttgctggttatgggtttgtggaggatgaatgaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51421089 gatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgatgagttgctggttatgggtttgtggaggatgaatgaa 51420990  T
Q  218 agagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatctaatggttaaaattgactt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  51420989 agagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgacaagattgtagatctaatggttaaaaatgactt 51420906  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 51421562 - 51421678
Alignment:
Q  184 gttgctggttatgggtttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatct 283  Q
    |||||||||  |||||| |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51421562 gttgctggtggtgggttggtgg-ggatgaaggagagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagattt 51421660  T
Q  284 aatggttaaaattgactt 301  Q
    ||||||| ||||||||||    
T  51421661 aatggttcaaattgactt 51421678  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 49287838 - 49287770
Alignment:
Q  207 ggatgaatgaaagagatggtagtggaagatagtgaca--aaaatatagtgttgagagtgtatgataaga 273  Q
    ||||||| || || |||||| ||||||||||||||||  ||||| | ||||||||||||||||||||||    
T  49287838 ggatgaaggagagtgatggttgtggaagatagtgacaaaaaaatttggtgttgagagtgtatgataaga 49287770  T

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Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 38931848 - 38932131
Alignment:
Q  18 caaatctgatattcacttcatatataataatgaacaatcaaaaccatgatcaatgttttggattgggattaatacattgtagcaaagaaaataaaataag 117  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||| |||| |||||||||||||| | ||||||||||||||||||    
T  38931848 caaatctgatatccacttcatatataataataaacaatcaaaaccatgagaaatgttttagatttggattaatacattgcatcaaagaaaataaaataag 38931947  T
Q  118 gatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgattagttgctggttatgggtttgtggaggatgaatgaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38931948 gatgaaggagagacaagggaaattaaataaattaacaataaagagttgggacggtggttttgatgagttgctggttatgggtttgtggaggatgaatgaa 38932047  T
Q  218 agagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatctaatggttaaaattgactt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  38932048 agagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgacaagattgtagatctaatggttaaaaatgactt 38932131  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 38931475 - 38931359
Alignment:
Q  184 gttgctggttatgggtttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatct 283  Q
    |||||||||  |||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931475 gttgctggtggtgggttggtgg-ggatgaaggagagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatct 38931377  T
Q  284 aatggttaaaattgactt 301  Q
    ||||||| ||||||||||    
T  38931376 aatggttcaaattgactt 38931359  T

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Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 38690555 - 38690685
Alignment:
Q  305 gattgggactataaaatcgaagaccaggtcaggtaagttgcacgaaaaaatcataagaaaaaacttgagaggaacaagagaaaataccccaaacaccacc 404  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38690555 gattgggactataaaatcgaagacgatgtcaggtaagttacacgaaaaaatcataagaaaaaacttgagaggaacaagagaaaataccccaaacaccacc 38690654  T
Q  405 attattttcttcttatccaatcccgtctaat 435  Q
    |||||||||||||||||||||||||| ||||    
T  38690655 attattttcttcttatccaatcccgtttaat 38690685  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 418
Target Start/End: Original strand, 38703425 - 38703507
Alignment:
Q  338 taagttgcacgaaaaaatcataagaaaaaacttgagaggaacaagaga-aaatacccc-aaacaccaccattattttcttctt 418  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  38703425 taagttacacgaaaaaatcataggaaaaaacttgagaggaacaagagagaaacaccccaaaacaccaccattattttcttctt 38703507  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 32944404 - 32944452
Alignment:
Q  218 agagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtat 266  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  32944404 agagatggtagtggaagatagtgacaataatctagtgttgagggtgtat 32944452  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 38064839 - 38064871
Alignment:
Q  246 aatatagtgttgagagtgtatgataagattgta 278  Q
    |||||||||||| ||||||||||||||||||||    
T  38064839 aatatagtgttgggagtgtatgataagattgta 38064871  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 13934955 - 13935056
Alignment:
Q  200 ttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatctaatggttaaaattgac 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  13934955 ttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgacaagattgtagatctaatggttaaaagtgac 13935054  T
Q  300 tt 301  Q
    ||    
T  13935055 tt 13935056  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 37562456 - 37562340
Alignment:
Q  184 gttgctggttatgggtttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatct 283  Q
    |||||||||  |||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37562456 gttgctggtggtgggttggtgg-ggatgaaggagagagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtatgataagattgtagatct 37562358  T
Q  284 aatggttaaaattgactt 301  Q
    ||||||||||||||||||    
T  37562357 aatggttaaaattgactt 37562340  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 37562837 - 37562937
Alignment:
Q  18 caaatctgatattcacttcatatataataatgaacaatcaaaaccatgatcaatgttttggattgggattaatacattgtagcaaagaaaataaaataag 117  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  37562837 caaatctgatatccacttcatatataataatgaacaatcaaaatcatgagcaatattttggattgggattaatacattgcagcaaagaaaataaaataag 37562936  T
Q  118 g 118  Q
    |    
T  37562937 g 37562937  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 37562938 - 37563017
Alignment:
Q  176 tttgattagttgctggttatgggtttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaatatagtgt 255  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  37562938 tttgatgagtcgctggttaggggtttgtggaggatgaatgaaagagatggtatcggaagatagtgacaaaaatatagtgt 37563017  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 1487690 - 1487662
Alignment:
Q  243 aaaaatatagtgttgagagtgtatgataa 271  Q
    |||||||||||||||||||||||||||||    
T  1487690 aaaaatatagtgttgagagtgtatgataa 1487662  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 4386088 - 4386173
Alignment:
Q  189 tggttatgggtttgtggaggatgaatgaaagagatggtagtggaagatagtgacaaaaa--tatagtgttgagagtgtatgataaga 273  Q
    |||| ||||||| |||| ||||||| || || |||||| ||||||||||||||||||||  | ||||||||||||||||||||||||    
T  4386088 tggtgatgggttggtgg-ggatgaaggagagtgatggttgtggaagatagtgacaaaaaattctagtgttgagagtgtatgataaga 4386173  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 33370795 - 33370843
Alignment:
Q  218 agagatggtagtggaagatagtgacaaaaatatagtgttgagagtgtat 266  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  33370795 agagatggtagtggaagatagtgacaataatctagtgttgagggtgtat 33370843  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 32548591 - 32548641
Alignment:
Q  218 agagatggtagtggaagatagtgacaaa--aatatagtgttgagagtgtat 266  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| ||||||    
T  32548591 agagatggtagtggaagatagtgacaaaataatataatgttgagggtgtat 32548641  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 35770411 - 35770357
Alignment:
Q  221 gatggtagtggaagatagtgacaaaaa--tatagtgttgagagtgtatgataaga 273  Q
    |||||| ||||||||||||||||||||  | | ||||||||||||||||||||||    
T  35770411 gatggttgtggaagatagtgacaaaaaattctggtgttgagagtgtatgataaga 35770357  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 8464497 - 8464465
Alignment:
Q  246 aatatagtgttgagagtgtatgataagattgta 278  Q
    |||||||||||| ||||||||||||||||||||    
T  8464497 aatatagtgttgggagtgtatgataagattgta 8464465  T

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