View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_6 (Length: 526)
Name: NF18584_low_6
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 102 - 513
Target Start/End: Complemental strand, 18622639 - 18622232
Alignment:
| Q |
102 |
gtaatcaaacattgttaagataaagagttgattttcattgatgacatgataata-acagatacatcagagacaaaatcaaaacccagcacccataactat |
200 |
Q |
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||||||||||||||||||||| |||| || |||||||| |||||||| ||||| |||| |||| |||||||| ||||||| | |||||| ||||| |
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| T |
18622639 |
gtaatcaaacattgttaagatgaagaattttttttcattaatgacatggtaatagacaggtacaa---agacaaaaccaaaacctatgacccattactat |
18622543 |
T |
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| Q |
201 |
gcaagacaaaaagttaccaagacacaaaaagcatccaccatattttcaccatctttttaacatactaacatcatttcaatctataggcttttagtcaact |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18622542 |
gcaagacaaaaagttaccaagacacaaa--gcatccaccatattttcaccatcttttaaacatactaacatcattccaatctataggcttttagtcaact |
18622445 |
T |
|
| Q |
301 |
tcctccatcttgctctcctcagcaccatcttcttccaatggaggcatgtcaacatcatccgctccagtttcgtcctcatctatgctaagacccaatttca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18622444 |
tcctccatcttgctctcctcagcaccatcttcttccaatggaggcatgtcaacatcatccgctccagtttcgtcctcatctatgctaagacccaatttca |
18622345 |
T |
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| Q |
401 |
acatcctatgaatccttccagcaaaggtgtttggctcatcaaggctaaaaccagaagtcaaaagagcggtttcaaaaagcagaagcacaaggtccttcac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18622344 |
acatcctatgaatccttccagcaaaggtgtttggctcatcaaggctaaaaccagaagtcaaaagagcggtttcaaaaagcagaagcacaaggtccttcac |
18622245 |
T |
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| Q |
501 |
tgatttgtcattc |
513 |
Q |
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| T |
18622244 |
tgatttgtcattc |
18622232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 513
Target Start/End: Original strand, 45060487 - 45060636
Alignment:
| Q |
364 |
ccagtttcgtcctcatctatgctaagacccaatttcaacatcctatgaatccttccagcaaaggtgtttggctcatcaaggctaaaaccagaagtcaaaa |
463 |
Q |
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| T |
45060487 |
ccagtctcttcctcatcaatgctgagacccagcttcaacattctgtgaattctaccagcaaacatgtttggatcatccaggctaaatccagaagttaaga |
45060586 |
T |
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| Q |
464 |
gagcggtttcaaaaagcagaagcacaaggtccttcactgatttgtcattc |
513 |
Q |
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| T |
45060587 |
gtgctgtctcaaagagaagcaacacaaggtccttcacagacttatcattc |
45060636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 513
Target Start/End: Original strand, 42164957 - 42165048
Alignment:
| Q |
422 |
caaaggtgtttggctcatcaaggctaaaaccagaagtcaaaagagcggtttcaaaaagcagaagcacaaggtccttcactgatttgtcattc |
513 |
Q |
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| T |
42164957 |
caaaggtgttgggctcatcaaggctgaatccagaggtaagaagagcagtctcaaacagcaagaggacaagatccttcacagatttgtcattc |
42165048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 513
Target Start/End: Original strand, 42175598 - 42175689
Alignment:
| Q |
422 |
caaaggtgtttggctcatcaaggctaaaaccagaagtcaaaagagcggtttcaaaaagcagaagcacaaggtccttcactgatttgtcattc |
513 |
Q |
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|||||||||| |||||||||||||| || ||||| || | |||||| || ||||| |||| || ||||| |||||||| |||||||||||| |
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| T |
42175598 |
caaaggtgttgggctcatcaaggctgaatccagaggtaagaagagcagtctcaaacagcaagaggacaagatccttcacagatttgtcattc |
42175689 |
T |
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