View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_7 (Length: 518)
Name: NF18584_low_7
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 6846760 - 6847262
Alignment:
| Q |
1 |
tctatgatttccgggtattttgagaatgaggatggagagaaggcgatgaatttgtttgtccagttgaaggcactgtgcttccctaaaccagatgactata |
100 |
Q |
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| T |
6846760 |
tctatgatttctgggtattttgagaatgaggatggagagaaggcgatgaatttgtttgtccagttgaaggcactgtgcttccctaaaccagatgactata |
6846859 |
T |
|
| Q |
101 |
catatgctgggattatatctgcaaccggtgcattcccgtgtttcagttatggaaaacctcttcatggtcaggttattaaagcaggatttgtaagaagcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6846860 |
catatgctgggattatatctgcaaccggtgcattcccgtgtttcagttatggaaaacctcttcatggtcaggttattaaagcaggatttgtaagaagcgt |
6846959 |
T |
|
| Q |
201 |
gtttgtgggaagcactctagtatcgatgtatttcaaaaatcaagaaactgaagctgctctgcgtgcattttgttcaatcccaggaaaggatgctattctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6846960 |
gtttgtgggaagcactctagtatcgatgtatttcaaaaatcaagaaactgaagctgctctgcgtgtattttgttcaatcccaggaaaggatgctattctc |
6847059 |
T |
|
| Q |
301 |
tggactgaaatgataactggttattccaaaatggctgatggaatgggtgcaattagatgcttttctgaaatgcatcatgaagctcatgagattgatgact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6847060 |
tggactgaaatgataactggttattccaaaatggctgatggaatgggtgcaattagatgcttttctgaaatgcatcatgaagttcatgagattgatgact |
6847159 |
T |
|
| Q |
401 |
atgttctcagtggagttttgagtgtttgtgctgacctttcaattttaagacaaggtgaaataattcattgttatgcttacaaattgggttatgatgttga |
500 |
Q |
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| T |
6847160 |
acgttctcagtggagttttgagtgtttgtgcttaccttgcaattttaagacaaggtgaaataattcattgttatgcttacaaattgggttatgatgttga |
6847259 |
T |
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| Q |
501 |
aat |
503 |
Q |
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||| |
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| T |
6847260 |
aat |
6847262 |
T |
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