View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18584_low_8 (Length: 503)
Name: NF18584_low_8
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 2 - 494
Target Start/End: Original strand, 47837369 - 47837861
Alignment:
| Q |
2 |
ttaacaatcacttcacaccgcaataaccacaatcgcaacgactgcaaccacatccgagaccacaaccacaatttaaaaccatgattattacctgagacgt |
101 |
Q |
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| T |
47837369 |
ttaacaatcacttcacaccgcaataaccacaatcgcaacgactgcaaccacatccgagaccacaaccacaatttaaaaccatgattattacctgagacgt |
47837468 |
T |
|
| Q |
102 |
caatatagttagaattattttcataattgtgttgcctttacatgtcagtttatcaaaagaaagaatttggaaatatagagaattcacaacgttggttttt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47837469 |
caatatagttagaattattttcataattgtgttgcctttacatgtcagtttatcaaaagaaagaatttggaaatatagagaatttacaacgttggttttt |
47837568 |
T |
|
| Q |
202 |
gtcaggactgtcatcattatgcatgaaaaatacaccgtggaacttcattttagtaaacctgttttgagaagagagaaaaagatgcattgtaacataaatt |
301 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47837569 |
gtcaggactgtcatcattatgcatgataaatacaccgtggaacttcattttagtaaacctgttttgagaagagagaaaaagatgcattgtaacataaatt |
47837668 |
T |
|
| Q |
302 |
aattgtaaattatgatttatccatggtatgtagaatattatataggagtttgaaatttttaaatgttataaattcattgaaaagttaaaacaatannnnn |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47837669 |
aattgtaaattatgatttatccatggtatgtagaatattatataggagtttgaaatttttaaatgttataaattcattgaaaagttaaaacaatattttt |
47837768 |
T |
|
| Q |
402 |
nncccaggaaatttatggttcaactggtatctggttacttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgt |
494 |
Q |
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| T |
47837769 |
ttcccaggaaatttatggttcaactggtatctggttacttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgt |
47837861 |
T |
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