View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18584_low_9 (Length: 495)
Name: NF18584_low_9
Description: NF18584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18584_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 24564115 - 24564579
Alignment:
| Q |
19 |
gttaaaaatcattttcaccatcttccaatcgctctattgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtag |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564115 |
gttaaaaatcattttcatcatcttccaatcgctctattgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtag |
24564214 |
T |
|
| Q |
119 |
tggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24564215 |
tggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaacaaaaaaa-tcaatgtgattaagacatgaaatgatc |
24564313 |
T |
|
| Q |
219 |
attgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564314 |
gttgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgg |
24564413 |
T |
|
| Q |
319 |
gtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatata |
418 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
24564414 |
gtattaaatgtattggcatgtataaagcatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatgta |
24564513 |
T |
|
| Q |
419 |
atcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
485 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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|
| T |
24564514 |
atcacatgtatctatattttgtaggcgacgaatacgggaacgtatcagacacc-aaacacgcctatg |
24564579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 56 - 411
Target Start/End: Complemental strand, 45535313 - 45534957
Alignment:
| Q |
56 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||||||||||||| ||||||||| |||||| |
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|
| T |
45535313 |
tgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagcggggtaaaatgtagctaatggataaaagaaagttttaattctgaaagtaatagtt |
45535214 |
T |
|
| Q |
156 |
aattacttcaacgtgactttgttacaacnnnnnnnn-tcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
254 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
45535213 |
aattaaatcaatgtgactttgttacaacaaaaaaaaatcaatgcgattaagagatgtaatgatcattgcagttgagaaaggccatacggccccttaactt |
45535114 |
T |
|
| Q |
255 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaat |
354 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||| | | || |
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|
| T |
45535113 |
agctaactaatttaaatgtatagttgcgcacaccaagttactcattgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacat |
45535014 |
T |
|
| Q |
355 |
atacacagagacactaacatctgaacaccgacaattattttaaaaaataatataatt |
411 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |
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|
| T |
45535013 |
atacatagagacactaacatgtgaacactgataattattttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 55 - 436
Target Start/End: Original strand, 44338195 - 44338572
Alignment:
| Q |
55 |
ttgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagtggggtaaaatttaggtagtggacaaaagaaagttttatttctgaaagcaatagt |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||| | || |||| |||||||||||||||||||||||| | |
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|
| T |
44338195 |
ttgcaaagcaagaaatcaaagagaaggcaatat--gaacatgaagtagggtaaaaagtaggtaattgataaaataaagttttatttctgaaagcaataat |
44338292 |
T |
|
| Q |
155 |
aaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
254 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||| |||| ||| |||||||| ||||||| |||||||||||||||| |||||| || |
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|
| T |
44338293 |
aaattaaatcaacgtgactttgt---aaccaaaaaaacaaatgtgatcaagagatgtaatgatcactgcagttcagaaaggccatatggctccttaaatt |
44338389 |
T |
|
| Q |
255 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatg-aatatggtttgg-aatgggtattaaatgtattagcatgtataaagaatcgga |
352 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||||||| |||||| || |||||| || ||||| ||||||||||||||||||||||||| ||| |
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|
| T |
44338390 |
agttgactaatttaaaggtatatttgcgcacaccaagttagtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgac |
44338489 |
T |
|
| Q |
353 |
atatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatc |
436 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |||||||| ||| | |||||| | |||| |||||||||| ||||||||||||| |
|
|
| T |
44338490 |
atatacccagagacattaacatgtgaacaaagacaatta-tttgagaaataacacaattaaatataatcatatgtatctatatc |
44338572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
394 |
ttaaaaaataatataattcaatataatcacatgtatc |
430 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 45535625 - 45535593
Alignment:
| Q |
19 |
gttaaaaatcattttcaccatcttccaatcgct |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45535625 |
gttaaaaatcattttcaccatcttccaatcgct |
45535593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
378 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
427 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 202 - 485
Target Start/End: Original strand, 9800524 - 9800805
Alignment:
| Q |
202 |
taagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg |
301 |
Q |
| |
|
|||| |||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
9800524 |
taagccatgtaatgatcattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatg |
9800623 |
T |
|
| Q |
302 |
aatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaa |
401 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
9800624 |
aatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaa |
9800722 |
T |
|
| Q |
402 |
taatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
485 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| ||| | ||||| ||||||||||||| |
|
|
| T |
9800723 |
taatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatg |
9800805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 9799024 - 9799190
Alignment:
| Q |
19 |
gttaaaaatcattttcaccatcttccaatcgctc-tattgcaaagcaagaaaccaaagagaaggcaatatatgaacatgaagt--ggggtaaaatttagg |
115 |
Q |
| |
|
|||||| ||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||| ||| |
|
|
| T |
9799024 |
gttaaagatccttttcaccatcttccggtcgctcatattgcaaagcaagataccaaagagaaagcaacatatgaacatgaagccgggggtaaaatgtagc |
9799123 |
T |
|
| Q |
116 |
tagtggacaaaagaaagttttatttctgaaagcaatagtaaattacttcaacgtgactttgttacaa |
182 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9799124 |
tactggatgaaagaaagatttatttctgaaagcaacagtaaattaaatcaacgtgactttgttacaa |
9799190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
391 |
attttaaaaaataatataattcaatataatcacatgtatct |
431 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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