View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18585_high_6 (Length: 247)
Name: NF18585_high_6
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18585_high_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 55896947 - 55896715
Alignment:
| Q |
10 |
aatatcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaaaactactgaaaactttatatgctttttagtatcaaacaactagt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55896947 |
aatatcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaaaactactgaaaactttatatgctttttagtag------actaac |
55896854 |
T |
|
| Q |
110 |
gttatgacacgt-tcaaattaattttattttatgattagtggtactattttatcttaaaattttattaatcaagggtttatttgctaataattcaaaaat |
208 |
Q |
| |
|
| || | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55896853 |
ataataaaacttatcaaattaattttattttatgattagtggtactattttatcttaaaattttattaatcaagggtttatttgctaataattcaaaaat |
55896754 |
T |
|
| Q |
209 |
tgtatgatattcttccttctcttacctcttcttccgccc |
247 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55896753 |
tgtatgatattgttccttctcttacctcttcttccgccc |
55896715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 1028230 - 1028360
Alignment:
| Q |
95 |
tatcaaacaactagtg-ttatgacacgttcaaattaattttattttatgattagtggtactattttatcttaaaattttattaatcaagggtttatttgc |
193 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028230 |
tatcaaacaaccagtggttatgacacgttcaaattaattttattttatgattaatggtactattttatcttaaaattttattaatcaagggtttatttgc |
1028329 |
T |
|
| Q |
194 |
taataattcaaaaattgtatgatattcttcc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1028330 |
taataattcaaaaattgtatgatattcttcc |
1028360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 1028095 - 1028150
Alignment:
| Q |
10 |
aatatcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaa |
65 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028095 |
aatagcagtacattagttttcaaacatttatcaaattcaatcactaaaatttaaaa |
1028150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 1028177 - 1028207
Alignment:
| Q |
61 |
taaaaaactactgaaaactttatatgctttt |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1028177 |
taaaaaactactgaaaactttatatgctttt |
1028207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University