View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18585_low_1 (Length: 400)
Name: NF18585_low_1
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18585_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 7883325 - 7883704
Alignment:
| Q |
1 |
tgaatctgtcataagtgatgcgatgtttgttccaagcatgaagagtagtaattcgataagtcttggtcaattacttgaaagaaattattcggtgaagatg |
100 |
Q |
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| T |
7883325 |
tgaatctgtcataagtgatgcgatgtttgttccaagcatgaagagta---attcgataagtcttggtcaattacttgaaagaaactattcggtgaagatg |
7883421 |
T |
|
| Q |
101 |
agaggtaaagaattaaaggtcattgatgaaagtgaaagattgatcttgaaggaacctctatccataaatagaaccttcaaaatagaaattgaagtattga |
200 |
Q |
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| T |
7883422 |
agaggtaaagaattaaatgtcattgatgaaagtgaaagattgatcttgaaggcacctctatccataaatagaaccttcaaaatagaaattgaagtattga |
7883521 |
T |
|
| Q |
201 |
atcatcattgtttagcagctacagttttgagtgaaaactggacatggcatcacaaatacgggcatctaaactttagaagcttgtgcataatgaatgcaaa |
300 |
Q |
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| T |
7883522 |
-tcatcattgtttagcagctacagttttgagtgaaaactggacatggcatcacaaatacgggcatctaaactttagaagcttgtgcataatgaatgcaaa |
7883620 |
T |
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| Q |
301 |
cggtatggtaaatggacttccccatatcaaagtacctaaacaagtttgcaatgaatgttgtgaagcaaaacaagcaagaaatcc |
384 |
Q |
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| T |
7883621 |
cggtatggtaaatgaacttccccatatcaaagtacctaaacaagtttgcaatgaatgttgtgaagcaaaacaagcaagaaatcc |
7883704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 54 - 384
Target Start/End: Original strand, 7898118 - 7898450
Alignment:
| Q |
54 |
cgataagtcttggtcaattacttgaaagaaattattcggtgaagatgagaggtaaagaattaaaggtcattgatgaaagtgaaagattgatcttgaagga |
153 |
Q |
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| T |
7898118 |
cgataagtcttggtcaattacttgaaagaaattattcggtgaagatgagaggtagagaattaaaggtcattgatgaaagtgaaagattgatcttgaaggc |
7898217 |
T |
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| Q |
154 |
acctctatccataaatagaaccttcaaaatagaaattgaagtattgaatcatcattgtttagcagctacagttttgagtgaaaactggacatggcatcac |
253 |
Q |
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| T |
7898218 |
acctctatccataaatagaaccttcaaaatagaaattgaagtattgaatcatcattgtttagcagctacagttttgagtgaaaactggacatggcatcac |
7898317 |
T |
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| Q |
254 |
aaatacgggcatctaaactttagaagcttgtgcataatgaatgc--aaacggtatggtaaatggacttccccatatcaaagtacctaaacaagtttgcaa |
351 |
Q |
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| T |
7898318 |
aaatacgggcatctaaactttagaagcttgtgcataatgaatgcaaaaaaggtatggtaaatggacttccccatatcaaagtacctaaacaagtttgcga |
7898417 |
T |
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| Q |
352 |
tgaatgttgtgaagcaaaacaagcaagaaatcc |
384 |
Q |
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| T |
7898418 |
tgaatgttgtgaagtaaaacaagcaagaaatcc |
7898450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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