View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18585_low_10 (Length: 242)

Name: NF18585_low_10
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18585_low_10
NF18585_low_10
[»] chr7 (3 HSPs)
chr7 (1-230)||(29213680-29213910)
chr7 (1-230)||(48618952-48619181)
chr7 (1-227)||(8019697-8019922)
[»] chr3 (4 HSPs)
chr3 (1-227)||(54346756-54346982)
chr3 (1-227)||(27156119-27156345)
chr3 (36-207)||(43812988-43813159)
chr3 (167-227)||(43912370-43912430)
[»] chr1 (6 HSPs)
chr1 (1-227)||(23084862-23085088)
chr1 (1-227)||(5308663-5308889)
chr1 (1-227)||(23949719-23949945)
chr1 (1-227)||(50952519-50952745)
chr1 (1-201)||(42677238-42677438)
chr1 (1-227)||(34553824-34554050)
[»] chr2 (6 HSPs)
chr2 (1-227)||(13186909-13187135)
chr2 (1-227)||(7305032-7305258)
chr2 (1-203)||(37307246-37307448)
chr2 (1-227)||(40190371-40190597)
chr2 (1-177)||(6598990-6599166)
chr2 (1-115)||(40426119-40426233)
[»] chr4 (2 HSPs)
chr4 (1-227)||(34389757-34389983)
chr4 (1-227)||(36894368-36894594)
[»] chr8 (3 HSPs)
chr8 (1-227)||(1636019-1636245)
chr8 (1-227)||(26616678-26616902)
chr8 (19-227)||(456330-456538)
[»] chr5 (3 HSPs)
chr5 (1-227)||(22540231-22540457)
chr5 (1-227)||(18259091-18259317)
chr5 (1-227)||(34080690-34080916)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29213680 - 29213910
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttccttt-acgccaaacatggttgag 99  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||||| ||| ||| ||| |||| |||||||  |||||||||    
T  29213680 aggagactccaacacaagaaaattaaagtgatctgtagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgccaagtatggttgag 29213779  T
Q  100 ttgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaa 199  Q
    |||||||||||||||| || | |  ||| | |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||| ||||||    
T  29213780 ttgaacattccaactcatcttcaatagcttctggatccggtgaagtaaaacagaaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaa 29213879  T
Q  200 atctttgaatcactttctactacaagataag 230  Q
    ||||||||||||||||| |||||||||||||    
T  29213880 atctttgaatcactttccactacaagataag 29213910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48619181 - 48618952
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||| ||||  ||||||| |||||||||||||||||||||||||| | ||||||||| |||||||  ||||||||||    
T  48619181 aggagactccaacactagaaaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatggttgagt 48619082  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  |||| | || || ||||||| ||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  48619081 tgaacattccaactcatcttcagcagcttccggatacagtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcaatcaaaa 48618982  T
Q  201 tctttgaatcactttctactacaagataag 230  Q
    |||||||||||||||| |||| ||||||||    
T  48618981 tctttgaatcactttccactataagataag 48618952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8019697 - 8019922
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||| || |||||||||||| ||||| ||||||   ||||||||||||||||||||||||| ||||||||||| |||||||  |||| |||||    
T  8019697 aggagactccagcacaagaaaattaaa-tgatctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagt 8019795  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||  |  |||| |||| || ||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  8019796 tgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 8019895  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  8019896 tctttgaatcactttccactataagat 8019922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54346982 - 54346756
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||  |||| |||||    
T  54346982 aggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtgagt 54346883  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  |||| |||| || ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  54346882 tgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaa 54346783  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  54346782 tctttgaatcactttccactataagat 54346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27156119 - 27156345
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||| ||||| ||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||  ||||||||||    
T  27156119 aggagactccaacactagaaaattaaaatgatctgtagaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagt 27156218  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  ||||||||| || ||||||| ||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  27156219 tgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgatcaaaa 27156318  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  27156319 tctttgaatcactttccactataagat 27156345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 43813159 - 43812988
Alignment:
Q  36 tagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagttgaacattccaactcctcattagcagcatttggat 135  Q
    |||||| |||||| |||||||| |||||||||| || |||||||| |||||||  |||||||||||||||||| |||||| ||   | || | |||||||    
T  43813159 tagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacatttcaactcatctgcaacaacttttggat 43813060  T
Q  136 ccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaatctttga 207  Q
    ||||| || ||||||| ||||||| | |||  | |||||||||||||||||||| || ||||||||||||||    
T  43813059 ccggtaaactaaaacatgaatattgccattacatttgaaattatcagaaatcatatcgatcaaaatctttga 43812988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 43912370 - 43912430
Alignment:
Q  167 aacttgaaattatcagaaatcatgtctatcaaaatctttgaatcactttctactacaagat 227  Q
    |||||||| || |||||||||||||  ||||| |||||||| |||||||| |||| |||||    
T  43912370 aacttgaacttctcagaaatcatgttgatcaatatctttgagtcactttcaactataagat 43912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23084862 - 23085088
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  23084862 aggagactccaacactagaaaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggttgagt 23084961  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  ||||||||| || ||||||| ||||||| | ||||||||||||||||||| |||||||||| |||||||    
T  23084962 tgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcaaaaatcatgtcgatcaaaa 23085061  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    ||||| |||||||||| |||| |||||    
T  23085062 tctttaaatcactttccactataagat 23085088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5308889 - 5308663
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||||||||||||| |||||||||||| ||||  ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||    
T  5308889 aggagactccaacacaagaaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagt 5308790  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||  |  |||| |||| || ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  5308789 tgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaa 5308690  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    ||||||| |||||||| |||| |||||    
T  5308689 tctttgattcactttccactataagat 5308663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23949945 - 23949719
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||||||||||||| || ||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||    
T  23949945 aggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagt 23949846  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||| ||||| || | |||||| |  |||| |||| || ||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  23949845 tgaacattctaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 23949746  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  23949745 tctttgaatcactttccactataagat 23949719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50952519 - 50952745
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||| |||||||||  |||||||||||  |||| ||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||  ||||||||||    
T  50952519 aggatactccaacactagaaaattaaaaagatctgtagaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggttgagt 50952618  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  ||||||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  50952619 tgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 50952718  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  50952719 tctttgaatcactttccactataagat 50952745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 42677438 - 42677238
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  |||||||||||  |||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||  ||||||||||    
T  42677438 aggagactccaacactagaaaattaaaaagatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagt 42677339  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  |||| |||| || ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  42677338 tgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaa 42677239  T
Q  201 t 201  Q
    |    
T  42677238 t 42677238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34553824 - 34554050
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||||||||||||| |||||||||||||||||  ||| ||| | ||||||||||||| ||||||||||  |||||||||| || ||||  ||||||||||    
T  34553824 aggagactccaacacaagaaaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaagtatggttgagt 34553923  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||| ||||| || | |||| | | ||||||| ||||| ||||| |  |||||| | ||  || |  |||||||||||||||||||| || ||||    
T  34553924 tgaacattctaactcatcttcagcatcttctggatccagtgaactaaaatagaaatattcccatcaaattcaaaattatcagaaatcatgtcgataaaaa 34554023  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  34554024 tctttgaatcactttccactataagat 34554050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13187135 - 13186909
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||||||||||||| || ||||||||| ||||  ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||  ||| ||||||    
T  13187135 aggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgattgagt 13187036  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  |||| |||| || ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||    
T  13187035 tgaacattccaactcgtcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaa 13186936  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  13186935 tctttgaatcactttccactataagat 13186909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7305032 - 7305258
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||  ||||||||||    
T  7305032 aggagactccaacactagaaaattaaagtgatctgtagaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttgagt 7305131  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    |||| |||||||||| || | |||||  |  ||||||||| |||||||||| |||||||   ||||||||||||||||| |||||||||||| |||||||    
T  7305132 tgaaaattccaactcatcttcagcaggttccggatccggtaaagtaaaacaggaatattctcattgaacttgaaattattagaaatcatgtcgatcaaaa 7305231  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  7305232 tctttgaatcactttccactataagat 7305258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 37307246 - 37307448
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||||||| ||| |||  ||||||||||    
T  37307246 aggagactccaacattagtaaattaaagtgatccgtagaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagt 37307345  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    |||||||| |||||| || |  ||| | ||  |||||||| || ||||||| |||||||   |||||||||||||||||||||||||||||| |||||||    
T  37307346 tgaacatttcaactcatcttcggcaactttcagatccggtaaactaaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaaa 37307445  T
Q  201 tct 203  Q
    |||    
T  37307446 tct 37307448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40190371 - 40190597
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||||| |||||||  || |||||||||||||||||| ||| |||||| |||| ||| |||||  ||| ||||||||||| | | |||  ||||||||||    
T  40190371 aggagattccaacactagtaaattaaagtgatccgtataaatgcttaagttagtgagtcaatctacactcctatttccttcatgtcaagtatggttgagt 40190470  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||  || ||||| |||| | ||||| | |||||| |  ||||||||| ||||||||||||||||| || |||||||    
T  40190471 tgaacattccaactcatcttcagcagttttgggatctggtggactaaaataggaatatgttcattgaacttaaaattatcagaaatcatatcgatcaaaa 40190570  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  40190571 tctttgaatcactttccactataagat 40190597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 6599166 - 6598990
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  | ||||| ||||||||  ||||||| |||||||||||||||||||||||||| | ||||||||| |||||||  ||||||||||    
T  6599166 aggagactccaacactaaaaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaattatggttgagt 6599067  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaatt 177  Q
    |||||||||||| || || | |||| | |  |||||||||||| ||||||| ||||||| | |||||||||||||||    
T  6599066 tgaacattccaattcatcttcagcaacttccggatccggtgaactaaaacaggaatattcccattgaacttgaaatt 6598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 40426119 - 40426233
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||| || |||||||||||| ||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| || ||||| |||| |||||    
T  40426119 aggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgggtgagt 40426218  T
Q  101 tgaacattccaactc 115  Q
    |||||||||||||||    
T  40426219 tgaacattccaactc 40426233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34389757 - 34389983
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  | ||||||||| ||||  ||| ||| |||||||||||||||||||||||||| ||||||||||| |||| ||  ||||||||||    
T  34389757 aggagactccaacactaaaaaattaaaatgatatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatggttgagt 34389856  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    |||||||||||| || || | |||||| || ||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  34389857 tgaacattccaaatcatcttcagcagctttcggatccggtaaactaaaacaagaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 34389956  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  34389957 tctttgaatcactttccactataagat 34389983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36894368 - 36894594
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||| ||||| ||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||||  ||||||||||    
T  36894368 aggagactccaacactagaaaattaaaatgatctgtataaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagt 36894467  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||| | |  ||||||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||| |||||||    
T  36894468 tgaacattccaactcatcttcagcaacttccggatccggtaaactaaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgatcaaaa 36894567  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  36894568 tctttgaatcactttccactataagat 36894594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1636245 - 1636019
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||| || |||||||||||| ||||| ||||||| | |||||||||||||||||||||||| ||||||||||| |||| ||  |||| |||||    
T  1636245 aggagactccagcacaagaaaattaaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgggtgagt 1636146  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  |||| |||| || ||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  1636145 tgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 1636046  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  1636045 tctttgaatcactttccactataagat 1636019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26616678 - 26616902
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||| ||||| ||||||| ||||||||||| ||||||||||| || | ||||||||| |||||||  ||||||||||    
T  26616678 aggagactccaacactagaaaattaaaatgatctgtagaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggttgagt 26616777  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |   |||||||| || |  |||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  26616778 tgaacattccaactcatcttcagcagcttccagatccggtaaact--aacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 26616875  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  26616876 tctttgaatcactttccactataagat 26616902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 456330 - 456538
Alignment:
Q  19 aaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagttgaacattccaactcctc 118  Q
    ||||| |||||||| |||||||| | |||||||||||||||||| ||||| |||||||||||  || |||  ||||||||||||||||||||||||| ||    
T  456330 aaaatcaaagtgatacgtagaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatc 456429  T
Q  119 attagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaatctttgaatcactttcta 218  Q
     | || ||| |  |||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||| || |||||| |||||||||||||||| |    
T  456430 ttcagtagcttccggatccggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatatcaatcaaactctttgaatcactttcca 456529  T
Q  219 ctacaagat 227  Q
    ||| |||||    
T  456530 ctataagat 456538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22540457 - 22540231
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    |||||||| |||||  |||||||| || ||||| ||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||  ||||||||||    
T  22540457 aggagacttcaacactagaaaatttaaatgatctgtagaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggttgagt 22540358  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||||| || | |||||| |  |||||| || || ||||||| ||||||||| || ||||||||||||||||||||||| ||| |||||||    
T  22540357 tgaacattccaactcatcttcagcagcttccggatccagtaaactaaaacaggaatatttccatcgaacttgaaattatcagaaatcacgtcgatcaaaa 22540258  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  22540257 tctttgaatcactttcaactataagat 22540231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18259091 - 18259317
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  ||||||||||| ||||| || |||| |||||||||||||||||||||||||| | |||||||||  |||||   ||||||||||    
T  18259091 aggagactccaacactagaaaattaaaatgatctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatggttgagt 18259190  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    |||||||| |||||  || | |||||| |  ||||||||| || ||||||||||||||| | |||||| ||| ||||||||||||||||||| |||||||    
T  18259191 tgaacatttcaacttatcttcagcagcttccggatccggtaaactaaaacaagaatattcccattgaatttggaattatcagaaatcatgtcgatcaaaa 18259290  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    |||||||||||||||| |||| |||||    
T  18259291 tctttgaatcactttccactataagat 18259317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34080690 - 34080916
Alignment:
Q  1 aggagactccaacataagaaaattaaagtgatccgtagaaaggcttaaattagcgagccaatcagcacacctatttcctttacgccaaacatggttgagt 100  Q
    ||||||||||||||  | ||||||||||||||  ||| ||| | |||||||||| ||||||||| ||| | | ||||||| |||||||  ||||||||||    
T  34080690 aggagactccaacactataaaattaaagtgatatgtaaaaatgtttaaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagt 34080789  T
Q  101 tgaacattccaactcctcattagcagcatttggatccggtgaagtaaaacaagaatatttctattgaacttgaaattatcagaaatcatgtctatcaaaa 200  Q
    ||||||||||||| | || | |||||| | ||||||||||||| |||||||||||||||   |||||||||||| |||||||||||||| || |||||||    
T  34080790 tgaacattccaacccatcttcagcagcttctggatccggtgaactaaaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaa 34080889  T
Q  201 tctttgaatcactttctactacaagat 227  Q
    ||||| |||||||||| |||| |||||    
T  34080890 tctttaaatcactttccactataagat 34080916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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