View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18585_low_11 (Length: 235)
Name: NF18585_low_11
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18585_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29213424 - 29213205
Alignment:
| Q |
1 |
cagttattttgaattgnnnnnnnctaccaaaagttttagtcaaaagattggaaaatgcgcataagggattgtttagaaaggtgtattgttgtatcaacaa |
100 |
Q |
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| T |
29213424 |
cagttattttgaattgaaaaaaactaccaaaagttttagtcaaaagattcgaaaatgcgcataagggattgtttacaaaggtgtattgttgtatcaacaa |
29213325 |
T |
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| Q |
101 |
gttgttacagcgaagagactcaaggaagctaatcaaggtgaagaagagttccaagccaaagtaattagcaatattggaaagcttaaccacatgaatttga |
200 |
Q |
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| T |
29213324 |
gttgttacagcgaagagactcaaggaagctaatcaaggtgaagaagagttccaagccaaagtaattagcaatattggaaagcttaaccacatgaatttga |
29213225 |
T |
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| Q |
201 |
ttgaattgtggggttattgt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
29213224 |
ttgaattgtggggttattgt |
29213205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 21130684 - 21130637
Alignment:
| Q |
173 |
attggaaagcttaaccacatgaatttgattgaattgtggggttattgt |
220 |
Q |
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| T |
21130684 |
attgaaaagcttaaccacatgaatttgattgaaatgtggggatattgt |
21130637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 47212636 - 47212443
Alignment:
| Q |
24 |
ctaccaaaagttttagtcaaaagattggaaaatgcgcataagggattgtttagaaaggtgtattgttgtatcaacaagttgttacagcgaagagactcaa |
123 |
Q |
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| T |
47212636 |
ctaccaaaagttttagtcaagagattggaaaaggcgcaggaggaattgtttacaaaggtgtattgttggatcaacgagttgtcgcggtgaagagactcaa |
47212537 |
T |
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| Q |
124 |
ggaagctaatcaaggtgaagaagagttccaagccaaagtaattagcaatattggaaagcttaaccacatgaatttgattgaattgtggggttattgt |
220 |
Q |
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| T |
47212536 |
ggaagcaaatcaaggcgaagaagagtttctcgcagaagta---agcagcattggaaagcttaaccacatgaatttgattgaaatgtggggttattgt |
47212443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 26714079 - 26714032
Alignment:
| Q |
173 |
attggaaagcttaaccacatgaatttgattgaattgtggggttattgt |
220 |
Q |
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||||||| ||||||||||||||||||||||| | |||||||||||||| |
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| T |
26714079 |
attggaaggcttaaccacatgaatttgattggaatgtggggttattgt |
26714032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 26737315 - 26737268
Alignment:
| Q |
173 |
attggaaagcttaaccacatgaatttgattgaattgtggggttattgt |
220 |
Q |
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||||||| |||||||||||||||||| |||| | |||||||||||||| |
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| T |
26737315 |
attggaaggcttaaccacatgaatttaattggaatgtggggttattgt |
26737268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 26751251 - 26751204
Alignment:
| Q |
173 |
attggaaagcttaaccacatgaatttgattgaattgtggggttattgt |
220 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
26751251 |
attggaaggcttaaccacatgaatttgattggtatgtggggttattgt |
26751204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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