View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18585_low_12 (Length: 227)
Name: NF18585_low_12
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18585_low_12 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44805486 - 44805260
Alignment:
| Q |
1 |
taaaccatggaatatcaaaattgcttatttataatcaataacaaacaggccctaaaattgatgatctctaattgattgacgaacatttaaaagaatccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44805486 |
taaaccatggaatatcaaaattgcttatttataatcaataacaaacaggccctaaaattgatgatctctaattgattgacgaacatttaaaagaatccta |
44805387 |
T |
|
| Q |
101 |
tcgaaatccaacaacctgtttcaactgcagcatcaggttgtggagcaagtacagaattttcatcagcagatcctaagcaaagaccgtgcaagctcttaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44805386 |
tcgaaatccaacaacctgtttcaactgcagcatcaggttgtggagcaagtacagaattttcatcagcagatcctaagcaaagcccgtgcaagctcttaat |
44805287 |
T |
|
| Q |
201 |
agcagcatctaaatcattgccacattc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44805286 |
agcagcatctaaatcattgccacattc |
44805260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University