View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18585_low_2 (Length: 368)
Name: NF18585_low_2
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18585_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 56538325 - 56538675
Alignment:
| Q |
1 |
tgagttagtttgtttggatgaggaaggtgtttttgttgttggtggtaaagttgagggcttggttgaaggtgctgagtggtggtactctgcatatagatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56538325 |
tgagttagtttgtttggatgaggaaggtgtttttgttgttggtggtaaagttgagggcttggttgaaggtgctgagtggtggtactctgcatatagatgc |
56538424 |
T |
|
| Q |
101 |
aataggagtgttttagctgcctccgggtcatattattgcaatggctgtgttaggcattgcaaagttaaggtcaaggttagtgatggtgaatgtaaagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56538425 |
aataggagtgttttagctgcctccgggtcatattattgcaatggctgtgttaggcattgcaaagttaaggtcaaggttagtgatggtgaatgtaaagtta |
56538524 |
T |
|
| Q |
201 |
tattagttttgtttgacaacgatgtgagtttcattgttaagaagtcttgtgctaaacttgtggctgatgcgaaggttagtttcaagatcaaatgtgtgtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
56538525 |
tattagttttgtttgacaacgatgtgagtttcattgttaagaagtcttgtgctaaacttgtggctgatgtgaaggttagtttcaagatcaaatgtgtgtg |
56538624 |
T |
|
| Q |
301 |
ccaagtaaagtagggtaatcaagtaaatttatgtgtatgtttaacacttat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56538625 |
ccaagtaaagtagggtaatcaagtaaatttatgtgtatgtttaacacttat |
56538675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University